Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrP   Type   Regulator
Locus tag   STH8232_RS03140 Genome accession   NC_017581
Coordinates   590020..591756 (+) Length   578 a.a.
NCBI ID   WP_014621319.1    Uniprot ID   -
Organism   Streptococcus thermophilus JIM 8232     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 585020..596756
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  STH8232_RS03135 (STH8232_0714) - 586031..588973 (+) 2943 WP_014621318.1 YSIRK signal domain/LPXTG anchor domain surface protein -
  STH8232_RS03140 (STH8232_0716) rcrP 590020..591756 (+) 1737 WP_014621319.1 ABC transporter ATP-binding protein Regulator
  STH8232_RS03145 (STH8232_0717) rcrQ 591769..593556 (+) 1788 WP_014608084.1 ABC transporter ATP-binding protein Regulator
  STH8232_RS03150 (STH8232_0718) queA 593654..594697 (-) 1044 WP_011680873.1 tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA -
  STH8232_RS03155 (STH8232_0719) - 594847..595548 (+) 702 WP_041829023.1 glucosamine-6-phosphate deaminase -

Sequence

Protein


Download         Length: 578 a.a.        Molecular weight: 64793.73 Da        Isoelectric Point: 5.7801

>NTDB_id=39633 STH8232_RS03140 WP_014621319.1 590020..591756(+) (rcrP) [Streptococcus thermophilus JIM 8232]
MAYIWSYLRRYPKWLAMNFTAAILFVIANLGLPTVLARMIDEGINRGDADKLYTYAWVMFGVVLTGIVGRVLLVYAVGKL
TTTMVQVMRNDIYAKLQEYSHHEYEQIGVSSLVTRITSDAFVLMQFADQVLKLGVITPLMMVSSVFLILTTSPSLAWIVA
ISLPLLAVVVWYVAVKTRPLSEKQQATLDKINQYARENLTGLRVIRAFAREDFQEKKFASENAVYADNSSKLFKLTGLTE
PLFVQIIIAMIVAIVWFALNPLGSGTLAIGDLVAFIEYSFHALLSFLFLANLFTMYPRTAVSSERLQEIMDMPISINPNE
DGVTETETRGYLEFDNVTFAYPGETESPVLHNISFKARPGETIAFIGSTGSGKSSLVQLIPRFYDVTLGRILVDGVDVRD
YNLKALRRKIGFIPQKALLFTGTIGENIRYGKENASHEELNQATDVAQAKEFIESKEERYDSHLAEGGSNLSGGQKQRLS
IARAVVKRPDLYIFDDSFSALDYKTDATLRRRLKEVTQDATVLIVAQRVGTIMDADQIIVLDKGEIVGRGRHEELMESNE
IYREIANSQLNQKSLTED

Nucleotide


Download         Length: 1737 bp        

>NTDB_id=39633 STH8232_RS03140 WP_014621319.1 590020..591756(+) (rcrP) [Streptococcus thermophilus JIM 8232]
ATGGCTTATATTTGGTCTTATCTCAGGCGTTACCCTAAGTGGCTAGCGATGAATTTTACGGCAGCTATTTTATTTGTTAT
TGCTAACCTGGGTCTGCCGACGGTTCTCGCCAGAATGATTGATGAGGGAATTAACCGTGGGGATGCTGACAAGCTTTATA
CCTATGCTTGGGTCATGTTTGGTGTGGTCTTAACTGGTATTGTTGGTCGTGTGCTTTTGGTCTATGCGGTTGGTAAGTTG
ACGACTACTATGGTGCAGGTCATGCGTAATGATATCTACGCCAAACTTCAGGAGTATTCACACCATGAGTACGAACAAAT
TGGGGTATCTTCTTTGGTGACTCGTATCACGTCGGATGCTTTTGTTCTCATGCAGTTTGCAGATCAAGTCCTCAAGTTGG
GTGTTATCACTCCTTTGATGATGGTTTCCAGTGTCTTTTTGATTTTGACGACAAGTCCATCTTTGGCTTGGATTGTGGCA
ATCTCCTTGCCTTTACTAGCTGTAGTTGTCTGGTATGTGGCGGTAAAAACGCGTCCGCTTTCTGAAAAACAACAGGCAAC
TCTCGACAAGATTAACCAGTATGCTCGTGAAAATCTGACTGGACTTCGTGTCATCCGTGCTTTCGCTAGAGAAGATTTCC
AAGAGAAGAAGTTTGCCTCTGAAAATGCTGTCTATGCAGATAATTCAAGCAAGCTCTTTAAATTGACTGGTTTAACAGAG
CCACTTTTTGTACAAATCATCATCGCTATGATTGTGGCTATTGTTTGGTTTGCCCTAAATCCATTAGGTTCTGGAACTCT
GGCAATCGGGGACTTGGTTGCCTTCATTGAGTACAGTTTCCATGCACTATTATCCTTCCTCTTTCTAGCTAATCTCTTTA
CCATGTATCCTCGTACAGCGGTATCTAGTGAACGTCTGCAGGAAATTATGGATATGCCGATTTCTATCAATCCAAATGAA
GATGGCGTGACAGAAACCGAGACTAGGGGATATTTGGAATTTGACAATGTGACCTTTGCCTATCCCGGTGAAACTGAAAG
TCCTGTCCTACACAACATTTCTTTCAAAGCTAGACCAGGTGAAACCATTGCCTTTATCGGATCTACGGGTTCAGGAAAAT
CATCACTTGTACAGTTGATTCCACGCTTTTATGATGTAACACTTGGACGCATTCTTGTTGATGGTGTAGATGTCCGTGAC
TACAATCTTAAGGCTCTTCGTCGTAAGATTGGCTTTATCCCACAAAAAGCCCTACTCTTTACAGGGACTATCGGTGAAAA
TATCCGTTATGGTAAGGAAAATGCCAGTCATGAAGAATTGAATCAAGCCACTGATGTGGCTCAAGCCAAGGAATTTATCG
AAAGTAAGGAAGAACGCTATGATTCTCACTTGGCTGAGGGTGGTAGCAACCTTTCTGGTGGACAGAAGCAGCGTTTGTCA
ATTGCACGTGCTGTGGTTAAACGTCCTGACCTTTACATCTTTGATGATTCCTTCTCTGCCTTGGACTACAAGACTGATGC
GACCTTGCGCCGTCGTCTAAAAGAAGTGACCCAGGATGCGACAGTCTTGATTGTGGCTCAACGTGTGGGAACCATTATGG
ATGCAGATCAGATTATCGTTCTTGATAAGGGTGAAATTGTTGGTCGTGGCCGTCACGAAGAGCTCATGGAAAGTAATGAG
ATTTACCGTGAGATTGCTAATTCACAATTGAATCAAAAGAGTCTTACGGAAGACTAG

Domains

Predicted by InterProScan.

ABC transporter transmembrane region (ABC_membrane)

(17-279)

ABC transporter (ABC_tran)

(350-497)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrP Streptococcus mutans UA159

39.85

92.042

0.367

Multiple sequence alignment