Detailed information    

insolico Bioinformatically predicted

Overview

Name   nucA/comI   Type   Machinery gene
Locus tag   GG619_RS01810 Genome accession   NZ_CP045711
Coordinates   338386..338823 (-) Length   145 a.a.
NCBI ID   WP_003156588.1    Uniprot ID   -
Organism   Bacillus velezensis strain HN-Q-8     
Function   cleavage of dsDNA into ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 333386..343823
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GG619_RS01785 (GG619_01785) - 334406..335542 (+) 1137 WP_015416779.1 zinc-dependent alcohol dehydrogenase -
  GG619_RS01790 (GG619_01790) - 335557..335991 (+) 435 WP_012116767.1 RDD family protein -
  GG619_RS01795 (GG619_01795) - 336108..336386 (+) 279 WP_263612330.1 YckD family protein -
  GG619_RS01800 (GG619_01800) - 336490..337926 (+) 1437 WP_015416781.1 glycoside hydrolase family 1 protein -
  GG619_RS01805 (GG619_01805) nin/comJ 337967..338365 (-) 399 WP_039252825.1 competence protein ComJ Regulator
  GG619_RS01810 (GG619_01810) nucA/comI 338386..338823 (-) 438 WP_003156588.1 NucA/NucB deoxyribonuclease domain-containing protein Machinery gene
  GG619_RS01815 (GG619_01815) hxlB 339181..339738 (-) 558 WP_039252823.1 6-phospho-3-hexuloisomerase -
  GG619_RS01820 (GG619_01820) hxlA 339735..340370 (-) 636 WP_015416785.1 3-hexulose-6-phosphate synthase -
  GG619_RS01825 (GG619_01825) - 340602..340964 (+) 363 WP_014304320.1 winged helix-turn-helix transcriptional regulator -

Sequence

Protein


Download         Length: 145 a.a.        Molecular weight: 16072.35 Da        Isoelectric Point: 8.4850

>NTDB_id=396197 GG619_RS01810 WP_003156588.1 338386..338823(-) (nucA/comI) [Bacillus velezensis strain HN-Q-8]
MKTLKALLLVLIIIAGAVAALIKGDLFSDNEQTVQKSDYDKVILFPSDRYPETAKHIKDAIKEGHSSICTIDRDGVHKRR
EQSLKHVPVKTGYDRDEWPMAVCKQGGNNASVEYISPADNRGAGSWVGHQLTNDPDGTRVLFKIK

Nucleotide


Download         Length: 438 bp        

>NTDB_id=396197 GG619_RS01810 WP_003156588.1 338386..338823(-) (nucA/comI) [Bacillus velezensis strain HN-Q-8]
TTGAAAACATTAAAAGCACTGCTGCTTGTTCTTATCATCATTGCCGGAGCAGTCGCGGCCCTGATCAAGGGTGATCTTTT
CTCAGATAACGAGCAGACCGTTCAGAAGAGTGATTACGACAAAGTAATCTTATTTCCGTCCGATCGATATCCGGAAACAG
CAAAGCATATTAAGGACGCGATAAAAGAAGGACATTCCAGCATATGCACCATTGACAGAGACGGAGTACATAAGCGGCGT
GAGCAATCCCTTAAACATGTGCCTGTCAAAACGGGATACGATAGGGATGAATGGCCGATGGCGGTTTGTAAACAGGGCGG
AAACAACGCCTCCGTAGAATATATTTCTCCGGCAGACAACCGCGGAGCCGGCTCTTGGGTCGGACACCAGCTTACCAATG
ATCCCGACGGAACGAGAGTATTATTTAAAATCAAGTAA

Domains

Predicted by InterproScan.

Deoxyribonuclease NucA/NucB (DNase_NucA_NucB)

(49-131)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  nucA/comI Bacillus subtilis subsp. subtilis str. 168

73.81

86.897

0.641

Multiple sequence alignment