Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilE   Type   Machinery gene
Locus tag   GHB96_RS10685 Genome accession   NZ_CP045707
Coordinates   2055583..2056002 (-) Length   139 a.a.
NCBI ID   WP_215772523.1    Uniprot ID   -
Organism   Neisseria gonorrhoeae strain NG250     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2050583..2061002
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GHB96_RS12030 (GHB96_11225) - 2051851..2052365 (-) 515 Protein_2077 pilin -
  GHB96_RS10665 (GHB96_11230) - 2052734..2052877 (-) 144 WP_047925941.1 hypothetical protein -
  GHB96_RS12035 - 2053180..2053298 (-) 119 Protein_2079 pilin -
  GHB96_RS10670 (GHB96_11235) - 2053421..2053818 (-) 398 Protein_2080 pilin -
  GHB96_RS10675 (GHB96_11245) lpxC 2053946..2054869 (-) 924 WP_003687007.1 UDP-3-O-acyl-N-acetylglucosamine deacetylase -
  GHB96_RS10685 (GHB96_11250) pilE 2055583..2056002 (-) 420 WP_215772523.1 pilin Machinery gene
  GHB96_RS10690 (GHB96_11255) - 2056098..2056529 (-) 432 Protein_2083 pilin -
  GHB96_RS10695 (GHB96_11260) - 2057056..2057409 (-) 354 Protein_2084 pilin -
  GHB96_RS10700 (GHB96_11265) pilE 2057348..2057665 (-) 318 WP_003697861.1 pilin Machinery gene
  GHB96_RS10705 - 2058037..2058168 (-) 132 WP_012504086.1 hypothetical protein -
  GHB96_RS10710 (GHB96_11270) - 2058250..2058939 (-) 690 WP_003687013.1 M48 family metallopeptidase -
  GHB96_RS10715 (GHB96_11275) - 2058936..2059679 (-) 744 WP_003687014.1 lysophospholipid acyltransferase family protein -
  GHB96_RS10720 (GHB96_11280) gmhB 2059709..2060272 (-) 564 WP_003687015.1 D-glycero-beta-D-manno-heptose 1,7-bisphosphate 7-phosphatase -

Sequence

Protein


Download         Length: 139 a.a.        Molecular weight: 15016.63 Da        Isoelectric Point: 5.2337

>NTDB_id=396186 GHB96_RS10685 WP_215772523.1 2055583..2056002(-) (pilE) [Neisseria gonorrhoeae strain NG250]
MPTDPDSRLRGNDEAILLAEGQKSAVTEYYLNNGIWPENNGDAGVASSPTDIKGKYVESVTVTNGVVTATMNSSNVNKEI
QGKRLSLWAKRENGSVKWFCGQPVKRANDAAKDAVTADAKDAIETKHLPSTCRDNFDAT

Nucleotide


Download         Length: 420 bp        

>NTDB_id=396186 GHB96_RS10685 WP_215772523.1 2055583..2056002(-) (pilE) [Neisseria gonorrhoeae strain NG250]
GTGCCGACAGACCCGGATTCCCGCCTGCGCGGGAATGACGAAGCCATCCTTTTGGCCGAAGGTCAAAAATCAGCCGTCAC
CGAGTATTACCTGAATAACGGCATATGGCCGGAAAACAACGGTGATGCCGGCGTGGCATCCTCCCCCACCGACATCAAAG
GCAAATATGTTGAAAGCGTTACGGTCACAAACGGCGTCGTCACCGCCACAATGAATTCAAGCAACGTAAACAAAGAAATC
CAAGGCAAAAGACTCTCCCTGTGGGCCAAGCGTGAAAACGGTTCGGTAAAATGGTTCTGCGGACAGCCGGTTAAGCGCGC
CAACGACGCCGCCAAAGACGCCGTTACCGCCGACGCCAAAGACGCCATCGAAACCAAGCACCTGCCGTCAACCTGCCGCG
ATAACTTTGATGCCACCTAA

Domains

Predicted by InterproScan.

Pilin (bacterial filament) (Pilin)

(14-133)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilE Neisseria gonorrhoeae MS11

72.263

98.561

0.712
  pilE Neisseria gonorrhoeae strain FA1090

66.429

100

0.669

Multiple sequence alignment