Detailed information    

insolico Bioinformatically predicted

Overview

Name   crp   Type   Regulator
Locus tag   GFB47_RS10635 Genome accession   NZ_CP045699
Coordinates   2321330..2321962 (+) Length   210 a.a.
NCBI ID   WP_153447942.1    Uniprot ID   A0A5Q0TG18
Organism   Vibrio algicola strain SM1977     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 2316330..2326962
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GFB47_RS10610 (GFB47_10590) kefG 2316653..2317258 (-) 606 WP_153447937.1 glutathione-regulated potassium-efflux system ancillary protein KefG -
  GFB47_RS10615 (GFB47_10595) - 2317438..2319348 (+) 1911 WP_153447938.1 ABC transporter ATP-binding protein -
  GFB47_RS10620 (GFB47_10600) - 2319345..2319821 (+) 477 WP_407701705.1 TIGR02444 family protein -
  GFB47_RS10625 (GFB47_10605) - 2319865..2320080 (+) 216 WP_153447940.1 YheU family protein -
  GFB47_RS10630 (GFB47_10610) - 2320217..2321086 (+) 870 WP_153447941.1 phosphoribulokinase -
  GFB47_RS10635 (GFB47_10615) crp 2321330..2321962 (+) 633 WP_153447942.1 cAMP-activated global transcriptional regulator CRP Regulator
  GFB47_RS10640 (GFB47_10620) - 2322058..2323263 (-) 1206 WP_153447943.1 aromatic amino acid transport family protein -
  GFB47_RS10645 (GFB47_10625) pyrE 2323606..2324247 (-) 642 WP_153447944.1 orotate phosphoribosyltransferase -
  GFB47_RS10650 (GFB47_10630) rph 2324341..2325069 (-) 729 WP_153447945.1 ribonuclease PH -
  GFB47_RS10655 (GFB47_10635) - 2325229..2326095 (+) 867 WP_153447946.1 YicC/YloC family endoribonuclease -

Sequence

Protein


Download         Length: 210 a.a.        Molecular weight: 23624.42 Da        Isoelectric Point: 7.4009

>NTDB_id=396086 GFB47_RS10635 WP_153447942.1 2321330..2321962(+) (crp) [Vibrio algicola strain SM1977]
MVLGKPQTDPTLEWFLSHCHIHKYPSKSTLIHAGEKAETLYYIVKGSVAVLIKDEEGKEMILSYLNQGDFIGELGLFEED
QERTAWVRAKSPCEVAEISFKKFRQLIQVNPDILMRLSAQMATRLQITSQKVGDLAFLDVTGRIAQTLLNLAKQPDAMTH
PDGMQIKITRQEIGQIVGCSRETVGRILKMLEEQNLISAHGKTIVVYGTR

Nucleotide


Download         Length: 633 bp        

>NTDB_id=396086 GFB47_RS10635 WP_153447942.1 2321330..2321962(+) (crp) [Vibrio algicola strain SM1977]
ATGGTTCTAGGTAAACCTCAAACTGACCCAACTTTAGAGTGGTTTCTATCGCATTGTCATATTCATAAGTACCCATCAAA
AAGTACTTTGATTCATGCTGGCGAAAAAGCAGAAACTTTGTACTACATCGTAAAAGGGTCTGTGGCTGTATTAATCAAGG
ATGAAGAAGGCAAAGAGATGATCTTGTCTTACTTAAACCAAGGCGATTTTATTGGTGAGCTAGGTCTATTTGAAGAAGAT
CAAGAGCGTACCGCTTGGGTTCGAGCTAAATCACCTTGTGAAGTTGCTGAAATTTCATTTAAGAAATTCCGTCAGCTTAT
CCAAGTGAATCCAGATATCTTGATGCGTCTGTCAGCTCAAATGGCAACTCGCCTACAAATCACTAGCCAAAAAGTGGGTG
ACTTAGCCTTCTTAGACGTTACCGGTCGTATTGCACAAACGCTACTTAATCTAGCCAAACAACCAGATGCAATGACTCAC
CCAGACGGCATGCAAATTAAGATAACTCGTCAAGAGATTGGTCAAATTGTTGGCTGCTCTCGTGAAACCGTTGGTCGTAT
CTTGAAAATGCTAGAAGAGCAAAATCTAATTTCTGCGCATGGTAAAACCATCGTGGTATACGGTACTCGTTAA

Domains

Predicted by InterproScan.

Cyclic nucleotide-binding domain (cNMP_binding)

(23-109)

Crp-like helix-turn-helix domain (HTH_Crp_2)

(142-206)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A5Q0TG18

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  crp Vibrio cholerae strain A1552

97.143

100

0.971
  crp Haemophilus influenzae Rd KW20

75

97.143

0.729
  crp Acinetobacter baumannii D1279779

47.343

98.571

0.467

Multiple sequence alignment