Detailed information
Bioinformatically predicted
Overview
| Name | comF | Type | Machinery gene |
| Locus tag | GFH30_RS11660 | Genome accession | NZ_CP045650 |
| Coordinates | 2433268..2433714 (-) | Length | 148 a.a. |
| NCBI ID | WP_153372798.1 | Uniprot ID | A0A5Q0P5P7 |
| Organism | Acinetobacter wanghuae strain dk386 | ||
| Function | assembly of type IV pilus (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 2428268..2438714
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| GFH30_RS11630 (GFH30_11625) | - | 2428808..2429770 (+) | 963 | WP_319923561.1 | triacylglycerol lipase | - |
| GFH30_RS11635 (GFH30_11630) | - | 2429903..2430871 (+) | 969 | WP_153372794.1 | triacylglycerol lipase | - |
| GFH30_RS11640 (GFH30_11635) | rplS | 2430943..2431320 (-) | 378 | WP_153372795.1 | 50S ribosomal protein L19 | - |
| GFH30_RS11645 (GFH30_11640) | trmD | 2431509..2432243 (-) | 735 | WP_153372796.1 | tRNA (guanosine(37)-N1)-methyltransferase TrmD | - |
| GFH30_RS11650 (GFH30_11645) | rimM | 2432286..2432834 (-) | 549 | WP_153372797.1 | ribosome maturation factor RimM | - |
| GFH30_RS11655 (GFH30_11650) | rpsP | 2432865..2433122 (-) | 258 | WP_099338145.1 | 30S ribosomal protein S16 | - |
| GFH30_RS11660 (GFH30_11655) | comF | 2433268..2433714 (-) | 447 | WP_153372798.1 | type IV pilin protein | Machinery gene |
| GFH30_RS11665 (GFH30_11660) | - | 2433701..2434210 (-) | 510 | WP_153372799.1 | type IV pilin protein | - |
| GFH30_RS11670 (GFH30_11665) | - | 2434219..2438460 (-) | 4242 | WP_227551501.1 | PilC/PilY family type IV pilus protein | - |
Sequence
Protein
Download Length: 148 a.a. Molecular weight: 16179.76 Da Isoelectric Point: 9.3075
>NTDB_id=395918 GFH30_RS11660 WP_153372798.1 2433268..2433714(-) (comF) [Acinetobacter wanghuae strain dk386]
MNLGNTKGFTLIELMIVVAIIAILAAIAYPSYTQYKQKVSRAEVKAEMMIIAGDLQKYKAVKGGYLINNTPMTLADLGRS
MTVKYPSQGTVFYEMTLENVTRNGWTLVATPQNSQSSTGMVALNHRGEKCWVKGAAVCSLSSTSSWDE
MNLGNTKGFTLIELMIVVAIIAILAAIAYPSYTQYKQKVSRAEVKAEMMIIAGDLQKYKAVKGGYLINNTPMTLADLGRS
MTVKYPSQGTVFYEMTLENVTRNGWTLVATPQNSQSSTGMVALNHRGEKCWVKGAAVCSLSSTSSWDE
Nucleotide
Download Length: 447 bp
>NTDB_id=395918 GFH30_RS11660 WP_153372798.1 2433268..2433714(-) (comF) [Acinetobacter wanghuae strain dk386]
ATGAATCTTGGTAATACCAAAGGATTTACATTGATTGAACTCATGATTGTAGTTGCTATTATCGCTATTTTAGCAGCAAT
TGCTTATCCATCTTATACACAGTATAAGCAAAAAGTCAGTCGCGCAGAAGTAAAAGCCGAAATGATGATAATTGCCGGAG
ATCTACAAAAATATAAAGCAGTAAAAGGTGGGTATTTAATTAATAATACTCCAATGACATTAGCTGATCTAGGACGATCA
ATGACTGTGAAATACCCAAGTCAGGGTACAGTGTTTTATGAGATGACGTTAGAAAATGTTACCCGCAATGGATGGACATT
AGTCGCGACCCCACAGAATTCTCAAAGTAGTACTGGTATGGTGGCATTAAATCATCGTGGTGAAAAATGTTGGGTTAAAG
GTGCAGCAGTATGTTCTCTTTCTTCAACCTCTAGCTGGGATGAATAA
ATGAATCTTGGTAATACCAAAGGATTTACATTGATTGAACTCATGATTGTAGTTGCTATTATCGCTATTTTAGCAGCAAT
TGCTTATCCATCTTATACACAGTATAAGCAAAAAGTCAGTCGCGCAGAAGTAAAAGCCGAAATGATGATAATTGCCGGAG
ATCTACAAAAATATAAAGCAGTAAAAGGTGGGTATTTAATTAATAATACTCCAATGACATTAGCTGATCTAGGACGATCA
ATGACTGTGAAATACCCAAGTCAGGGTACAGTGTTTTATGAGATGACGTTAGAAAATGTTACCCGCAATGGATGGACATT
AGTCGCGACCCCACAGAATTCTCAAAGTAGTACTGGTATGGTGGCATTAAATCATCGTGGTGAAAAATGTTGGGTTAAAG
GTGCAGCAGTATGTTCTCTTTCTTCAACCTCTAGCTGGGATGAATAA
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| comF | Acinetobacter baylyi ADP1 |
50 |
97.297 |
0.486 |
| pilE | Acinetobacter baumannii D1279779 |
46.853 |
96.622 |
0.453 |