Detailed information    

insolico Bioinformatically predicted

Overview

Name   codY   Type   Regulator
Locus tag   SGGB_RS09495 Genome accession   NC_017576
Coordinates   1909398..1910183 (-) Length   261 a.a.
NCBI ID   WP_003066268.1    Uniprot ID   A0A4R5G5Z8
Organism   Streptococcus gallolyticus subsp. gallolyticus ATCC 43143     
Function   repress the expression of comX (predicted from homology)   
Competence regulation

Genomic Context

Location: 1904398..1915183
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SGGB_RS09470 (SGGB_1855) - 1904447..1905355 (-) 909 WP_009854863.1 DMT family transporter -
  SGGB_RS09475 (SGGB_1856) gatB 1905516..1906958 (-) 1443 WP_009854864.1 Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase subunit GatB -
  SGGB_RS09480 (SGGB_1857) gatA 1906958..1908424 (-) 1467 WP_009854865.1 Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase subunit GatA -
  SGGB_RS09485 (SGGB_1858) gatC 1908424..1908726 (-) 303 WP_009854866.1 Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase subunit GatC -
  SGGB_RS09490 (SGGB_1859) - 1908850..1909398 (-) 549 WP_009854867.1 cysteine hydrolase family protein -
  SGGB_RS09495 (SGGB_1860) codY 1909398..1910183 (-) 786 WP_003066268.1 GTP-sensing pleiotropic transcriptional regulator CodY Regulator
  SGGB_RS09500 (SGGB_1861) - 1910396..1911610 (-) 1215 WP_009854868.1 pyridoxal phosphate-dependent aminotransferase -
  SGGB_RS09505 (SGGB_1862) - 1911647..1913413 (-) 1767 WP_009854869.1 glycerophosphoryl diester phosphodiesterase membrane domain-containing protein -
  SGGB_RS09510 (SGGB_1863) - 1913737..1914189 (+) 453 WP_009854870.1 universal stress protein -

Sequence

Protein


Download         Length: 261 a.a.        Molecular weight: 28860.04 Da        Isoelectric Point: 4.4574

>NTDB_id=39576 SGGB_RS09495 WP_003066268.1 1909398..1910183(-) (codY) [Streptococcus gallolyticus subsp. gallolyticus ATCC 43143]
MPNLLEKTRKITSILQRSVDSLDTELPYNTMAAQLADIIDCNACIINGGGNLLGYAMKYKTNTDRVEEFFDAKQFPESYV
KAASRVYDTEANLSVDNELTIFPVESKDIYPDGLTTIAPIYGGGMRLGSLIIWRNDKEFLEDDLILVEIASTVVGIQLLN
LQTENLEETIRKQTAVNMAINTLSYSEMKAVSAILGELDGTEGRLTASVIADRIGITRSVIVNALRKLESAGIIESRSLG
MKGTYLKVINEGIFDKLKEYN

Nucleotide


Download         Length: 786 bp        

>NTDB_id=39576 SGGB_RS09495 WP_003066268.1 1909398..1910183(-) (codY) [Streptococcus gallolyticus subsp. gallolyticus ATCC 43143]
ATGCCGAATTTATTAGAAAAAACACGAAAGATTACATCAATTTTGCAACGCTCTGTTGACAGCTTAGACACTGAATTGCC
ATATAATACAATGGCTGCTCAATTAGCTGATATCATTGATTGTAACGCTTGCATCATCAACGGAGGAGGTAACCTTCTTG
GTTATGCAATGAAGTATAAAACAAATACTGACCGCGTAGAGGAATTCTTTGATGCCAAACAATTCCCAGAAAGCTATGTT
AAAGCGGCTAGTCGTGTTTACGACACAGAGGCAAACTTGTCTGTGGATAATGAATTGACTATTTTCCCAGTAGAATCAAA
AGACATCTATCCTGATGGCTTGACAACTATTGCACCAATTTATGGTGGTGGTATGCGTCTAGGTTCTCTTATCATTTGGC
GTAATGATAAAGAGTTTTTAGAAGATGATTTGATTCTTGTTGAAATTGCCTCAACAGTAGTTGGTATCCAATTACTTAAT
CTTCAAACTGAAAATCTTGAAGAAACCATTCGTAAACAAACAGCTGTTAATATGGCTATTAACACGCTATCTTACTCAGA
AATGAAAGCTGTATCAGCTATTTTGGGTGAATTAGACGGTACAGAAGGTCGCTTAACTGCATCAGTTATTGCTGACCGCA
TTGGTATCACACGTTCAGTTATTGTTAATGCCCTACGTAAATTGGAATCTGCGGGGATTATCGAAAGTCGTTCATTGGGT
ATGAAAGGAACTTACCTTAAAGTCATCAATGAAGGTATTTTCGATAAATTAAAGGAATATAATTAA

Domains

Predicted by InterProScan.

CodY helix-turn-helix domain (HTH_CodY)

(202-261)

CodY GAF-like domain (CodY)

(3-182)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A4R5G5Z8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  codY Lactococcus lactis subsp. lactis strain DGCC12653

65.9

100

0.659
  codY Bacillus subtilis subsp. subtilis str. 168

52.227

94.636

0.494

Multiple sequence alignment