Detailed information    

insolico Bioinformatically predicted

Overview


Name   addB   Type   Machinery gene
Locus tag   GFH33_RS06940 Genome accession   NZ_CP045585
Coordinates   1287176..1290691 (+) Length   1171 a.a.
NCBI ID   WP_000058598.1    Uniprot ID   A0A9W5QJU2
Organism   Bacillus thuringiensis strain x023     
Function   homologous recombination; plasmid transformation (predicted from homology)   
Homologous recombination

Related MGE


Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
Prophage 1283506..1343019 1287176..1290691 within 0


Gene organization within MGE regions


Location: 1283506..1343019
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GFH33_RS06910 (GFH33_06910) cspA 1283506..1283709 (+) 204 WP_000301518.1 RNA chaperone/antiterminator CspA -
  GFH33_RS06915 (GFH33_06915) - 1283907..1284110 (-) 204 WP_000356923.1 hypothetical protein -
  GFH33_RS06920 (GFH33_06920) - 1284459..1284644 (-) 186 WP_000391373.1 hypothetical protein -
  GFH33_RS06925 (GFH33_06925) - 1284929..1285510 (+) 582 WP_000444439.1 competence protein ComK -
  GFH33_RS06930 (GFH33_06930) - 1285846..1286439 (+) 594 WP_000347518.1 TVP38/TMEM64 family protein -
  GFH33_RS06935 (GFH33_06935) lepB 1286496..1287059 (+) 564 WP_000751910.1 signal peptidase I -
  GFH33_RS06940 (GFH33_06940) addB 1287176..1290691 (+) 3516 WP_000058598.1 helicase-exonuclease AddAB subunit AddB Machinery gene
  GFH33_RS06945 (GFH33_06945) addA 1290688..1294413 (+) 3726 WP_000572259.1 helicase-exonuclease AddAB subunit AddA Machinery gene
  GFH33_RS06950 (GFH33_06950) - 1294426..1294713 (+) 288 WP_000255727.1 RNA polymerase alpha subunit C-terminal domain-containing protein -
  GFH33_RS06955 (GFH33_06955) gerPF 1294851..1295066 (-) 216 WP_001141566.1 spore germination protein GerPF -
  GFH33_RS06960 (GFH33_06960) - 1295109..1295495 (-) 387 WP_000902319.1 spore germination protein GerPE -
  GFH33_RS06965 (GFH33_06965) gerPD 1295511..1295705 (-) 195 WP_001052807.1 spore germination protein GerPD -
  GFH33_RS06970 (GFH33_06970) gerPC 1295712..1296326 (-) 615 WP_001070761.1 spore germination protein GerPC -
  GFH33_RS06975 (GFH33_06975) gerPB 1296394..1296600 (-) 207 WP_001012508.1 spore germination protein GerPB -
  GFH33_RS06980 (GFH33_06980) gerPA 1296615..1296836 (-) 222 WP_001111187.1 spore germination protein GerPA -
  GFH33_RS06985 (GFH33_06985) - 1296933..1297112 (-) 180 WP_000462845.1 aspartyl-phosphate phosphatase Spo0E family protein -
  GFH33_RS06990 (GFH33_06990) - 1297359..1298258 (+) 900 WP_001213086.1 fumarylacetoacetate hydrolase family protein -
  GFH33_RS06995 (GFH33_06995) - 1298294..1298578 (-) 285 WP_000926864.1 hypothetical protein -
  GFH33_RS07000 (GFH33_07000) rocD 1298689..1299879 (-) 1191 WP_000616658.1 ornithine aminotransferase -
  GFH33_RS07005 (GFH33_07005) - 1300030..1300398 (+) 369 WP_000233495.1 YisL family protein -
  GFH33_RS07010 (GFH33_07010) - 1300453..1301007 (-) 555 WP_000616049.1 DUF2777 domain-containing protein -
  GFH33_RS07015 (GFH33_07015) asnB 1301246..1303024 (+) 1779 WP_000333967.1 asparagine synthase (glutamine-hydrolyzing) -
  GFH33_RS07020 (GFH33_07020) - 1303055..1304458 (-) 1404 WP_000650392.1 recombinase family protein -
  GFH33_RS07025 (GFH33_07025) - 1304602..1304820 (-) 219 WP_000289677.1 helix-turn-helix transcriptional regulator -
  GFH33_RS07030 (GFH33_07030) - 1304836..1305519 (-) 684 WP_000130922.1 LexA family transcriptional regulator -
  GFH33_RS07035 (GFH33_07035) - 1305669..1305941 (+) 273 WP_000385074.1 helix-turn-helix transcriptional regulator -
  GFH33_RS07040 (GFH33_07040) - 1306007..1306171 (+) 165 WP_000014074.1 hypothetical protein -
  GFH33_RS07045 (GFH33_07045) - 1306254..1306409 (+) 156 WP_000788388.1 hypothetical protein -
  GFH33_RS07050 (GFH33_07050) - 1306424..1307176 (+) 753 WP_000372563.1 phage regulatory protein -
  GFH33_RS07055 (GFH33_07055) - 1307188..1307376 (+) 189 WP_001186272.1 hypothetical protein -
  GFH33_RS07060 (GFH33_07060) - 1307403..1307837 (+) 435 WP_000453494.1 hypothetical protein -
  GFH33_RS07065 (GFH33_07065) - 1307856..1308569 (+) 714 WP_000178947.1 hypothetical protein -
  GFH33_RS07070 (GFH33_07070) - 1308569..1308784 (+) 216 WP_015382226.1 hypothetical protein -
  GFH33_RS07075 (GFH33_07075) - 1308855..1309055 (+) 201 WP_015382227.1 hypothetical protein -
  GFH33_RS07080 (GFH33_07080) - 1309149..1310102 (+) 954 WP_000510888.1 DnaD domain protein -
  GFH33_RS07085 (GFH33_07085) - 1310114..1310593 (+) 480 WP_000933912.1 hypothetical protein -
  GFH33_RS07090 (GFH33_07090) - 1310586..1310816 (+) 231 WP_000139235.1 hypothetical protein -
  GFH33_RS07095 (GFH33_07095) - 1310840..1311397 (+) 558 WP_015382228.1 hypothetical protein -
  GFH33_RS07100 (GFH33_07100) - 1311436..1311870 (+) 435 WP_001010921.1 hypothetical protein -
  GFH33_RS07105 (GFH33_07105) - 1311929..1312219 (+) 291 WP_001268033.1 hypothetical protein -
  GFH33_RS07110 (GFH33_07110) - 1312366..1313157 (+) 792 WP_001093039.1 prohibitin family protein -
  GFH33_RS07115 (GFH33_07115) - 1313242..1313424 (+) 183 WP_000356654.1 hypothetical protein -
  GFH33_RS07120 (GFH33_07120) - 1313584..1313988 (+) 405 WP_000389429.1 YopX family protein -
  GFH33_RS07125 (GFH33_07125) - 1314222..1314533 (+) 312 WP_000590880.1 hypothetical protein -
  GFH33_RS07130 (GFH33_07130) recU 1314569..1315096 (+) 528 WP_000540088.1 Holliday junction resolvase RecU -
  GFH33_RS07135 (GFH33_07135) - 1315093..1315419 (+) 327 WP_038413362.1 hypothetical protein -
  GFH33_RS07140 (GFH33_07140) - 1315457..1315858 (+) 402 WP_033676375.1 hypothetical protein -
  GFH33_RS07145 (GFH33_07145) - 1316241..1316660 (-) 420 WP_000711196.1 type II toxin-antitoxin system HicB family antitoxin -
  GFH33_RS07150 (GFH33_07150) - 1316712..1316894 (-) 183 WP_071686481.1 type II toxin-antitoxin system HicA family toxin -
  GFH33_RS07155 (GFH33_07155) - 1317191..1318384 (+) 1194 WP_000499523.1 IS110-like element ISBth13 family transposase -
  GFH33_RS07160 (GFH33_07160) - 1318656..1318856 (+) 201 WP_000196707.1 hypothetical protein -
  GFH33_RS07165 (GFH33_07165) - 1318873..1319175 (+) 303 WP_001051281.1 HNH endonuclease signature motif containing protein -
  GFH33_RS07170 (GFH33_07170) - 1319178..1319573 (+) 396 WP_001149928.1 hypothetical protein -
  GFH33_RS07175 (GFH33_07175) - 1319666..1320028 (+) 363 WP_001282601.1 hypothetical protein -
  GFH33_RS07180 (GFH33_07180) - 1320037..1321725 (+) 1689 WP_033676369.1 terminase TerL endonuclease subunit -
  GFH33_RS07185 (GFH33_07185) - 1321739..1322917 (+) 1179 WP_000522435.1 phage portal protein -
  GFH33_RS07190 (GFH33_07190) - 1323012..1324205 (-) 1194 WP_000499523.1 IS110-like element ISBth13 family transposase -
  GFH33_RS07195 (GFH33_07195) - 1324502..1325086 (+) 585 WP_000361708.1 HK97 family phage prohead protease -
  GFH33_RS07200 (GFH33_07200) - 1325103..1326287 (+) 1185 WP_001031425.1 phage major capsid protein -
  GFH33_RS07205 (GFH33_07205) - 1326303..1326560 (+) 258 WP_001016250.1 hypothetical protein -
  GFH33_RS07210 (GFH33_07210) - 1326557..1326829 (+) 273 WP_000600950.1 head-tail connector protein -
  GFH33_RS07215 (GFH33_07215) - 1326826..1327125 (+) 300 WP_000998123.1 phage head closure protein -
  GFH33_RS07220 (GFH33_07220) - 1327118..1327474 (+) 357 WP_001273706.1 HK97 gp10 family phage protein -
  GFH33_RS07225 (GFH33_07225) - 1327471..1327800 (+) 330 WP_000172080.1 hypothetical protein -
  GFH33_RS07230 (GFH33_07230) - 1327801..1328394 (+) 594 WP_001004921.1 major tail protein -
  GFH33_RS07235 (GFH33_07235) - 1328401..1328763 (+) 363 WP_000415929.1 hypothetical protein -
  GFH33_RS07240 (GFH33_07240) - 1328994..1332626 (+) 3633 WP_015382231.1 hypothetical protein -
  GFH33_RS07245 (GFH33_07245) - 1332668..1334137 (+) 1470 WP_000094123.1 distal tail protein Dit -
  GFH33_RS07250 (GFH33_07250) - 1334134..1338978 (+) 4845 WP_015382232.1 phage tail spike protein -
  GFH33_RS07255 (GFH33_07255) - 1338994..1339368 (+) 375 WP_001004976.1 hypothetical protein -
  GFH33_RS07260 (GFH33_07260) - 1339406..1339831 (+) 426 WP_000373898.1 phage holin family protein -
  GFH33_RS07265 (GFH33_07265) - 1339831..1340763 (+) 933 WP_000405773.1 N-acetylmuramoyl-L-alanine amidase -
  GFH33_RS07270 (GFH33_07270) - 1340929..1341495 (-) 567 WP_000742862.1 hypothetical protein -
  GFH33_RS07275 (GFH33_07275) - 1341635..1341853 (+) 219 WP_001016122.1 hypothetical protein -
  GFH33_RS07280 (GFH33_07280) - 1341878..1342168 (+) 291 WP_000100788.1 YolD-like family protein -
  GFH33_RS07285 (GFH33_07285) - 1342186..1343019 (-) 834 WP_000730207.1 hypothetical protein -

Sequence


Protein


Download         Length: 1171 a.a.        Molecular weight: 134140.38 Da        Isoelectric Point: 5.1777

>NTDB_id=395317 GFH33_RS06940 WP_000058598.1 1287176..1290691(+) (addB) [Bacillus thuringiensis strain x023]
MSLRFVIGRAGSGKSTLCLREVQEELKQRPRGKTILYLVPEQMTFQTQQALIGSEDVRGSIRAQVFSFSRLAWKVLQEVG
GASRLHIDEAGVHMLLRKIVESRKDGLSVFQKAAEQNGFFEHLGSMIAEFKRYNVTPSNVYEMWQQLDAHSSSAEQKLLA
NKVYDLQLLYDDFERALIGKYLDSEDYLQLLVEKLPQSEYVNGAEIYIDGFHSFSPQELEIVRQLMICGARVTITLTIDE
KTLAQPVNELDLFYETTLTYEKIKQVAREEKIEIEKTIPLMEQPRFHSPALAHLEAHYEARPNEKFNGEASVTISTAANL
RAEVEGVAREIRKLVAEENYRYRDIAVLLRNGESYYDVMRTLFTDYNIPHFIDEKRPMSHHPLVECIRSALEIISGNWRY
DAVFRCVKTELLYPLDVRKETMREEMDEFENYCLAYGVQGKRWTSEDPWMYRRYRSLDDTNGMITDSEREMEEKINRLRD
VVRTPVIRMQKRLKRAGTVMQMCEAVYLFLEELDVPKKLEELRIRAEESGDFLFATDHEQVWEEVMSLLDTFVEMLGEEK
MSLSMFTDVMSTGLEALQFANIPPSLDQVLIANIDHSRLSDVKATFIIGVNEGVIPAAPMDEGMLSDEEREVLGAAGIEL
APTTRQTLLEEQFVMYQMVTRASEKLYISCPLADEEGKTLLASSFIKKIKRMFPNVKDSFITNDVNDLSRSEQISYVATP
EVTLSYVMQQLQTWKRYGFEGNLDFWWDVYNFYVTSDEWKQKSSRVLSSLFYRNRAKKLSTAVSRDLYGDIIKGSVSRME
LFNRCAYAHFAQHGLSLRERDIFKLDAPDIGELFHAALKKIADKLLRENRTWADLSIKECEHLSVLVIEEIAPLLQRQIL
LSSNRHFYLKQKLQQIIFRTSIILREHAKSSGFVPVDLEVPFGMGGTGSLPPMEFSLPNGVKMEVVGRIDRVDKAEDENG
TFLRIIDYKSSSKALDLTEVYYGLALQMLTYLDVVTSNAQTWMKKGHAASPAGVLYFHIHNPIVEMKGDASEAEIEKEIL
KKFKMKGLVLGDADVVRLMDNKLSTGSSDIISAGLKKDGSFSARSSIASEQEFNVLQKYVHHTFENIGKDITEGVIDIAP
YKMGNKAACTFCNFKSVCQFDESLEDNQFRSLKDMKDSEAMEKIREEVGGE

Nucleotide


Download         Length: 3516 bp        

>NTDB_id=395317 GFH33_RS06940 WP_000058598.1 1287176..1290691(+) (addB) [Bacillus thuringiensis strain x023]
ATGTCACTTCGATTTGTGATTGGTAGAGCGGGAAGTGGAAAAAGTACACTTTGTTTACGCGAAGTGCAAGAAGAGTTAAA
ACAACGCCCGAGAGGGAAAACAATATTATATCTTGTGCCAGAACAGATGACATTCCAGACGCAGCAGGCGTTAATTGGAA
GTGAGGATGTAAGAGGTTCTATTCGGGCACAAGTTTTTAGTTTTTCACGATTAGCGTGGAAGGTACTACAAGAAGTTGGC
GGAGCGAGTCGTCTTCATATTGATGAAGCGGGTGTACATATGTTACTCCGTAAAATTGTAGAGTCTCGTAAAGATGGATT
ATCGGTGTTCCAAAAAGCAGCGGAGCAAAACGGTTTCTTTGAACATCTTGGCAGTATGATTGCAGAGTTTAAACGTTACA
ATGTAACGCCATCTAACGTATATGAAATGTGGCAACAATTGGATGCGCATAGTAGCAGTGCCGAACAAAAGTTACTAGCG
AATAAAGTGTATGATTTACAGCTATTATACGATGATTTTGAACGTGCTTTAATTGGAAAATATTTAGATTCAGAAGACTA
CCTACAATTGCTAGTGGAAAAGCTTCCGCAGTCTGAATATGTAAATGGTGCGGAAATTTATATAGATGGATTTCATTCAT
TTTCCCCGCAAGAGTTAGAGATTGTAAGACAGCTTATGATTTGCGGAGCGAGAGTTACGATCACGTTAACGATAGATGAA
AAAACGTTAGCACAGCCAGTAAATGAACTCGATTTATTTTATGAAACGACGTTAACGTATGAAAAAATCAAACAAGTAGC
GCGTGAAGAGAAAATAGAAATTGAAAAAACAATTCCACTTATGGAACAGCCGCGTTTTCATTCTCCGGCATTAGCGCATT
TAGAAGCTCATTATGAAGCGCGTCCGAATGAAAAATTTAACGGTGAAGCGAGTGTAACGATTAGTACAGCTGCGAATTTA
CGAGCAGAGGTAGAAGGTGTTGCGCGTGAAATTCGTAAACTTGTGGCGGAGGAAAACTATCGTTACCGAGATATTGCGGT
TCTTCTTCGTAATGGGGAAAGTTATTACGATGTGATGCGAACGTTATTTACAGATTATAATATCCCACACTTCATCGATG
AAAAGCGCCCGATGTCACACCACCCATTAGTAGAATGTATTCGTTCTGCACTCGAGATTATTAGTGGGAATTGGCGTTAT
GATGCGGTGTTCCGCTGCGTGAAAACAGAGCTTTTATATCCATTAGACGTAAGAAAAGAAACGATGCGTGAAGAAATGGA
TGAATTTGAAAATTACTGTTTAGCGTACGGTGTACAAGGAAAGAGGTGGACTTCAGAGGATCCATGGATGTATCGCCGTT
ATCGTTCTCTTGATGATACGAACGGGATGATCACAGATAGTGAACGTGAAATGGAAGAGAAAATAAATCGATTGCGTGAC
GTTGTAAGAACACCTGTTATTCGCATGCAAAAAAGGTTAAAGCGTGCAGGAACAGTTATGCAAATGTGTGAAGCAGTTTA
CTTATTTCTAGAAGAGCTGGATGTTCCGAAAAAACTAGAAGAATTACGTATACGTGCAGAAGAAAGTGGAGATTTCTTAT
TTGCGACAGATCATGAACAAGTATGGGAAGAAGTAATGAGCCTTCTTGATACGTTTGTAGAGATGCTTGGTGAAGAGAAA
ATGTCTCTTTCTATGTTTACGGACGTTATGTCGACAGGTCTTGAGGCACTTCAATTTGCTAACATTCCGCCGTCATTAGA
CCAAGTGTTAATTGCTAATATTGATCACTCCAGGTTATCTGACGTGAAAGCAACGTTTATTATAGGTGTAAATGAGGGTG
TTATTCCAGCAGCACCTATGGACGAAGGTATGCTTTCTGATGAAGAAAGAGAAGTTCTTGGTGCAGCAGGGATTGAATTA
GCGCCAACGACGAGACAAACTTTGTTAGAAGAACAGTTCGTTATGTATCAAATGGTAACGAGAGCATCTGAGAAGTTATA
TATTTCATGCCCGCTTGCAGATGAAGAAGGAAAGACGTTACTTGCGTCTAGCTTTATTAAGAAAATAAAAAGAATGTTCC
CTAATGTGAAAGATTCATTTATTACCAATGACGTAAACGATTTATCACGTTCAGAACAAATTTCATACGTAGCAACGCCA
GAAGTAACGTTATCTTACGTTATGCAGCAACTACAAACGTGGAAGCGATACGGATTTGAAGGGAATTTAGACTTTTGGTG
GGACGTATATAATTTCTACGTAACTTCAGATGAATGGAAACAAAAAAGTAGCCGCGTCTTATCAAGTTTATTCTATCGAA
ATCGTGCGAAGAAACTAAGTACAGCAGTAAGTAGAGATTTATACGGAGATATAATTAAAGGAAGCGTCTCTCGTATGGAA
CTATTTAACCGTTGTGCATACGCTCATTTTGCGCAGCACGGTTTATCGCTTAGAGAGCGTGATATTTTCAAGCTTGATGC
GCCGGACATCGGCGAATTATTCCATGCGGCATTAAAGAAAATTGCGGACAAGCTATTGCGTGAAAACCGTACTTGGGCGG
ATTTATCCATAAAAGAGTGTGAGCATCTTTCTGTTTTAGTAATAGAAGAAATCGCACCGTTATTACAACGACAAATTTTA
TTAAGTTCAAACCGTCATTTCTATTTAAAACAAAAACTACAACAAATCATTTTCCGTACGTCAATCATTCTTCGTGAACA
TGCGAAGTCAAGCGGATTCGTACCAGTTGATTTAGAAGTGCCGTTCGGTATGGGTGGTACAGGATCACTTCCGCCGATGG
AATTCTCATTACCAAATGGTGTGAAGATGGAAGTTGTCGGCCGTATTGACCGTGTTGATAAGGCAGAAGATGAAAACGGG
ACGTTCTTACGTATTATTGATTATAAATCAAGTTCAAAAGCGTTAGATTTAACGGAAGTGTATTACGGATTAGCACTTCA
AATGTTAACGTATTTAGATGTTGTTACTTCGAATGCGCAGACGTGGATGAAAAAAGGTCACGCAGCATCACCAGCTGGTG
TATTGTATTTCCATATTCATAACCCAATCGTTGAGATGAAAGGTGACGCATCTGAAGCTGAAATTGAAAAAGAAATTTTA
AAGAAATTTAAAATGAAAGGACTCGTATTAGGAGATGCTGACGTTGTTCGTTTAATGGATAACAAACTTTCAACAGGAAG
TTCAGATATTATTTCTGCTGGCCTGAAAAAAGACGGTAGCTTTAGTGCGCGTTCAAGTATTGCAAGTGAGCAAGAGTTTA
ACGTACTGCAAAAATATGTACACCATACGTTTGAAAATATCGGAAAAGATATTACAGAAGGTGTTATCGATATTGCTCCT
TATAAAATGGGAAATAAAGCAGCATGTACGTTCTGTAACTTCAAATCTGTTTGTCAATTTGATGAGTCACTTGAAGATAA
TCAGTTCCGATCGTTAAAAGATATGAAAGATAGCGAAGCGATGGAGAAAATAAGAGAGGAGGTTGGCGGAGAATGA


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  addB Bacillus subtilis subsp. subtilis str. 168

49.488

100

0.495


Multiple sequence alignment