Detailed information
Bioinformatically predicted
Overview
| Name | comF | Type | Machinery gene |
| Locus tag | GE296_RS04180 | Genome accession | NZ_CP045564 |
| Coordinates | 897846..898499 (-) | Length | 217 a.a. |
| NCBI ID | WP_004918078.1 | Uniprot ID | A0AAP6LJM8 |
| Organism | Riemerella anatipestifer strain RA-LZ01 | ||
| Function | ssDNA transport into the cell (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 892846..903499
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| GE296_RS04165 | - | 893666..894748 (-) | 1083 | WP_004918073.1 | serine hydrolase | - |
| GE296_RS04170 | - | 894859..896514 (-) | 1656 | WP_004918074.1 | ribonucleoside-diphosphate reductase subunit alpha | - |
| GE296_RS04175 | - | 896562..897536 (-) | 975 | WP_004918076.1 | ribonucleotide-diphosphate reductase subunit beta | - |
| GE296_RS04180 | comF | 897846..898499 (-) | 654 | WP_004918078.1 | ComF family protein | Machinery gene |
| GE296_RS04190 | - | 898721..899272 (-) | 552 | WP_004918080.1 | hypothetical protein | - |
| GE296_RS04195 | - | 899327..899977 (-) | 651 | WP_004918082.1 | HD domain-containing protein | - |
| GE296_RS04200 | gdhA | 900109..901467 (-) | 1359 | WP_014938006.1 | NADP-specific glutamate dehydrogenase | - |
| GE296_RS04205 | dprA | 901651..902754 (-) | 1104 | WP_004918085.1 | DNA-processing protein DprA | Machinery gene |
| GE296_RS04210 | - | 902757..903134 (-) | 378 | WP_004918086.1 | group III truncated hemoglobin | - |
Sequence
Protein
Download Length: 217 a.a. Molecular weight: 25339.46 Da Isoelectric Point: 9.4150
>NTDB_id=395204 GE296_RS04180 WP_004918078.1 897846..898499(-) (comF) [Riemerella anatipestifer strain RA-LZ01]
MFLDFFLPNRCLKCNLIISSDEIVCWACKSHINFTYNDFGGKGDFYQKVVLKFPVNKAFSLMKYEKKELSQDIIHALKYH
SMERVGKVLAHWVSENMDLSHQGIDILTNIPLHPKKQRERGYNQLHLFTKTLSQLQRIPYSHYLLKRNFYSKPQALKQKL
DREKMQNIFSVDEKIEGKHILLIDDVYTTGNTMSKAVWELLKGNGNQVSVLVLAIDE
MFLDFFLPNRCLKCNLIISSDEIVCWACKSHINFTYNDFGGKGDFYQKVVLKFPVNKAFSLMKYEKKELSQDIIHALKYH
SMERVGKVLAHWVSENMDLSHQGIDILTNIPLHPKKQRERGYNQLHLFTKTLSQLQRIPYSHYLLKRNFYSKPQALKQKL
DREKMQNIFSVDEKIEGKHILLIDDVYTTGNTMSKAVWELLKGNGNQVSVLVLAIDE
Nucleotide
Download Length: 654 bp
>NTDB_id=395204 GE296_RS04180 WP_004918078.1 897846..898499(-) (comF) [Riemerella anatipestifer strain RA-LZ01]
ATGTTTTTAGATTTTTTTCTGCCCAATAGATGCCTAAAGTGTAATCTCATTATTTCCTCTGATGAAATCGTTTGCTGGGC
GTGTAAGTCTCATATCAATTTTACCTACAATGATTTTGGAGGAAAAGGGGATTTTTATCAAAAAGTTGTTCTTAAATTTC
CAGTAAATAAGGCTTTTAGTTTGATGAAGTACGAGAAAAAAGAACTTTCTCAAGATATTATACACGCCTTAAAGTACCAT
TCTATGGAGCGTGTGGGTAAGGTGTTAGCTCATTGGGTTTCTGAAAATATGGATTTATCTCATCAAGGGATAGATATATT
AACTAATATTCCACTTCATCCTAAAAAACAAAGAGAGAGAGGGTATAATCAGTTGCATTTATTTACAAAAACATTATCTC
AGTTGCAGAGGATACCTTATTCTCATTATCTTCTTAAAAGAAATTTCTATTCTAAGCCTCAAGCCTTAAAGCAAAAATTG
GATAGAGAAAAGATGCAAAATATATTTTCTGTAGATGAGAAAATAGAAGGTAAACACATCTTACTTATAGACGATGTATA
TACCACAGGAAATACAATGAGTAAAGCGGTTTGGGAGCTTTTAAAAGGAAATGGGAATCAGGTGAGTGTTTTGGTTTTGG
CAATAGATGAATAA
ATGTTTTTAGATTTTTTTCTGCCCAATAGATGCCTAAAGTGTAATCTCATTATTTCCTCTGATGAAATCGTTTGCTGGGC
GTGTAAGTCTCATATCAATTTTACCTACAATGATTTTGGAGGAAAAGGGGATTTTTATCAAAAAGTTGTTCTTAAATTTC
CAGTAAATAAGGCTTTTAGTTTGATGAAGTACGAGAAAAAAGAACTTTCTCAAGATATTATACACGCCTTAAAGTACCAT
TCTATGGAGCGTGTGGGTAAGGTGTTAGCTCATTGGGTTTCTGAAAATATGGATTTATCTCATCAAGGGATAGATATATT
AACTAATATTCCACTTCATCCTAAAAAACAAAGAGAGAGAGGGTATAATCAGTTGCATTTATTTACAAAAACATTATCTC
AGTTGCAGAGGATACCTTATTCTCATTATCTTCTTAAAAGAAATTTCTATTCTAAGCCTCAAGCCTTAAAGCAAAAATTG
GATAGAGAAAAGATGCAAAATATATTTTCTGTAGATGAGAAAATAGAAGGTAAACACATCTTACTTATAGACGATGTATA
TACCACAGGAAATACAATGAGTAAAGCGGTTTGGGAGCTTTTAAAAGGAAATGGGAATCAGGTGAGTGTTTTGGTTTTGG
CAATAGATGAATAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| comF | Riemerella anatipestifer ATCC 11845 = DSM 15868 |
100 |
100 |
1 |