Detailed information    

insolico Bioinformatically predicted

Overview

Name   recD2   Type   Machinery gene
Locus tag   SPSINT_RS06980 Genome accession   NC_014925
Coordinates   1428076..1430475 (-) Length   799 a.a.
NCBI ID   WP_014613741.1    Uniprot ID   A0A3D8ZF31
Organism   Staphylococcus pseudintermedius HKU10-03     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1423076..1435475
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SPSINT_RS06960 (SPSINT_1380) - 1424110..1424430 (-) 321 WP_014613745.1 DUF1292 domain-containing protein -
  SPSINT_RS06965 (SPSINT_1381) ruvX 1424444..1424872 (-) 429 WP_014613744.1 Holliday junction resolvase RuvX -
  SPSINT_RS06970 (SPSINT_1382) - 1424865..1425137 (-) 273 WP_014613743.1 IreB family regulatory phosphoprotein -
  SPSINT_RS06975 (SPSINT_1383) alaS 1425200..1427830 (-) 2631 WP_015729263.1 alanine--tRNA ligase -
  SPSINT_RS06980 (SPSINT_1384) recD2 1428076..1430475 (-) 2400 WP_014613741.1 ATP-dependent RecD-like DNA helicase Machinery gene
  SPSINT_RS06985 (SPSINT_1385) - 1430478..1431152 (-) 675 WP_014613740.1 tetratricopeptide repeat protein -
  SPSINT_RS06990 (SPSINT_1386) mnmA 1431168..1432280 (-) 1113 WP_014613739.1 tRNA 2-thiouridine(34) synthase MnmA -
  SPSINT_RS06995 (SPSINT_1387) - 1432280..1433425 (-) 1146 WP_014613738.1 cysteine desulfurase family protein -
  SPSINT_RS07000 (SPSINT_1388) - 1433634..1434650 (+) 1017 WP_014613737.1 LLM class flavin-dependent oxidoreductase -
  SPSINT_RS07005 (SPSINT_1389) - 1435115..1435300 (-) 186 WP_014613736.1 CsbD family protein -

Sequence

Protein


Download         Length: 799 a.a.        Molecular weight: 90330.64 Da        Isoelectric Point: 4.5526

>NTDB_id=39515 SPSINT_RS06980 WP_014613741.1 1428076..1430475(-) (recD2) [Staphylococcus pseudintermedius HKU10-03]
MENPTLFDHTFIKGTVEMILFQNTDNHYTVLKVEIEETNGDFDDMATVVGYFPNMVEDESYTFKGQIVQHARYGQQLKAE
TFQKEIPHTKDAVIAYLSSELFKGIGKKTAESIVNTLGENAIHDILKDESVIEQVPKLSKAKQQQIVEQIYANQESEQVM
IRLNELGFGSKLAMDIYKFYKSDTLTVLDQNPYQLVYDIKGVGFNKADQLAQQLGIHPEHPDRLKAGLLYLVEDTCIKQG
HTYLPQEALINETIQLLSQGKDSSVDYDTMTQILAELVEEKRLVNQEEMVAIPSLYYSEIKSTQNLYKIFANREHLTTFD
ASDIQLHIGEIEEVNEVHYAPSQKEALEYAIQHKVMLLTGGPGTGKTTVIKGIVQLYAEIHGISLDYDDYSDEDDYPVVL
AAPTGRASKRLHEATGLEAMTIHRLIGWNQDTKPQDKLDNEIHAKLIIIDEMSMVDTWLFHQFMDAVPIDAQVVLVGDED
QLPSVGPGQVFKDLIDANVLPRINLTEVYRQQDGSSIIDLAHRMKLGEKVDITQRFHDRSFIPCQTDQIPQVVEKVVNNA
VQKGYTMADIQVLAPMYRGNAGIKKLNQILQGILNPLSDESQREIEFGDVLFRKGDKVLQLINRPNDNVFNGDIGVIVGI
FWAKENALNKDVVVVDYDGNEITYLRSDLTELTHAYCTSIHKAQGSEFPIVIMPIVKQYFRMLQKPILYTGLTRAKQSLV
FLGDADAFNIGLATAGQTRLTQLQTFLMQYFTPEDTDDKTDTDTASAEFILTEATMFKIHPMINMGEVTPYDFLEIDKV

Nucleotide


Download         Length: 2400 bp        

>NTDB_id=39515 SPSINT_RS06980 WP_014613741.1 1428076..1430475(-) (recD2) [Staphylococcus pseudintermedius HKU10-03]
ATGGAAAATCCAACACTGTTTGACCATACATTTATTAAAGGCACCGTAGAGATGATTTTGTTTCAGAATACGGACAATCA
TTACACAGTGCTTAAAGTTGAAATAGAAGAAACAAATGGTGACTTTGATGATATGGCAACAGTGGTTGGATATTTTCCGA
ATATGGTAGAAGATGAGTCGTACACTTTTAAAGGCCAAATCGTGCAACATGCAAGATATGGTCAGCAATTAAAAGCTGAG
ACGTTTCAAAAAGAAATTCCTCATACCAAAGATGCTGTTATTGCATATTTATCTAGTGAATTGTTTAAAGGGATTGGTAA
AAAAACAGCAGAATCCATTGTCAATACATTAGGTGAAAATGCGATTCATGACATTTTGAAAGATGAATCTGTCATCGAAC
AAGTGCCTAAACTGTCTAAAGCGAAACAACAACAAATTGTCGAGCAGATTTATGCCAACCAAGAAAGTGAACAAGTGATG
ATTCGATTGAACGAACTTGGTTTTGGTTCAAAGCTTGCGATGGACATTTACAAGTTTTATAAAAGTGATACATTAACGGT
ACTCGACCAAAATCCGTATCAACTTGTTTATGACATTAAAGGGGTTGGTTTTAACAAAGCGGACCAACTGGCACAACAGC
TCGGTATTCATCCAGAGCACCCCGACCGTTTAAAAGCCGGCTTACTTTATTTAGTTGAAGATACGTGTATTAAACAAGGT
CATACGTACCTCCCACAAGAAGCGTTAATCAATGAAACGATTCAACTGCTGTCTCAGGGCAAAGATTCAAGTGTCGACTA
TGACACCATGACGCAAATTTTAGCTGAATTAGTTGAAGAAAAACGACTAGTGAATCAAGAGGAAATGGTGGCCATCCCAA
GTCTTTATTATTCGGAAATTAAAAGCACACAAAATTTATATAAAATATTTGCCAATCGAGAGCATTTAACTACATTTGAT
GCTTCAGATATTCAATTACATATTGGGGAAATTGAAGAGGTCAATGAAGTACATTATGCCCCTTCTCAAAAAGAGGCTTT
AGAATATGCGATTCAACATAAAGTCATGCTTCTCACGGGTGGACCAGGTACAGGGAAAACAACTGTCATTAAAGGAATTG
TCCAGTTATATGCAGAAATTCACGGCATCTCATTAGATTACGATGACTATTCAGATGAAGATGATTATCCGGTCGTATTA
GCTGCACCAACCGGAAGAGCGTCTAAACGTTTACATGAAGCGACAGGGTTAGAAGCAATGACGATTCACCGCTTAATTGG
TTGGAATCAAGATACGAAGCCGCAAGACAAATTAGACAATGAAATTCATGCGAAATTGATTATTATTGATGAAATGTCTA
TGGTCGACACTTGGCTATTCCATCAATTTATGGATGCAGTCCCTATAGATGCCCAAGTCGTATTAGTCGGTGATGAAGAC
CAGCTTCCATCAGTTGGCCCTGGACAAGTTTTTAAAGATCTCATTGATGCAAATGTATTACCGCGCATCAATTTAACTGA
AGTTTATCGCCAACAGGACGGCTCCAGTATTATTGATTTAGCGCATCGTATGAAACTCGGTGAAAAAGTTGATATTACCC
AACGTTTTCACGATCGTTCGTTTATTCCATGTCAAACCGATCAAATTCCACAAGTCGTAGAAAAAGTCGTCAACAATGCC
GTGCAAAAAGGGTATACAATGGCAGATATTCAAGTGCTCGCGCCGATGTATCGTGGTAATGCAGGGATTAAAAAGCTCAA
TCAAATTTTACAAGGCATTTTGAACCCTTTGTCAGACGAATCGCAACGTGAGATTGAATTTGGTGATGTTCTATTTCGTA
AAGGCGACAAAGTATTGCAACTGATTAATCGTCCAAACGATAATGTGTTTAATGGTGATATTGGTGTTATTGTCGGTATT
TTTTGGGCAAAGGAAAATGCTTTAAATAAAGATGTCGTGGTCGTTGATTATGATGGGAACGAAATTACTTATTTACGCTC
TGATTTGACGGAATTGACACATGCATATTGTACTTCGATTCATAAAGCGCAAGGTTCAGAGTTTCCAATTGTCATCATGC
CGATTGTTAAGCAGTATTTTAGAATGTTACAAAAACCGATTTTATATACTGGATTAACGCGTGCCAAACAATCGCTCGTT
TTTCTTGGTGATGCAGATGCTTTTAATATCGGGTTAGCGACTGCGGGTCAAACGCGATTAACACAATTACAAACGTTCTT
AATGCAATATTTTACTCCGGAAGATACTGATGATAAAACAGATACTGATACAGCTTCGGCTGAGTTTATTTTAACTGAAG
CGACTATGTTTAAAATCCATCCGATGATTAATATGGGTGAAGTGACACCTTATGACTTTTTAGAAATTGACAAAGTTTAA

Domains

Predicted by InterproScan.

Helix-hairpin-helix containing domain (HHH_RecD2)

(153-243)

UvrD-like helicase C-terminal domain (UvrD_C_2)

(674-721)

ATP-dependent RecD-like DNA helicase SH3 domain (SH3_13)

(586-656)

AAA domain (AAA_30)

(339-546)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A3D8ZF31

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recD2 Bacillus subtilis subsp. subtilis str. 168

49.435

99.75

0.493

Multiple sequence alignment