Detailed information    

insolico Bioinformatically predicted

Overview

Name   recD/recD2/recDB   Type   Machinery gene
Locus tag   GE021_RS09060 Genome accession   NZ_CP053792
Coordinates   1847471..1849903 (+) Length   810 a.a.
NCBI ID   WP_164406422.1    Uniprot ID   -
Organism   Streptococcus canis strain HL_77_1     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1842471..1854903
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GE021_RS09040 (GE021_009030) - 1844895..1845440 (-) 546 WP_003045194.1 CvpA family protein -
  GE021_RS09045 (GE021_009035) - 1845443..1845751 (-) 309 WP_003045196.1 hypothetical protein -
  GE021_RS09050 (GE021_009040) rnhC 1845898..1846806 (+) 909 WP_093999376.1 ribonuclease HIII -
  GE021_RS09055 (GE021_009045) lepB 1846817..1847410 (+) 594 WP_003045201.1 signal peptidase I -
  GE021_RS09060 (GE021_009050) recD/recD2/recDB 1847471..1849903 (+) 2433 WP_164406422.1 ATP-dependent RecD-like DNA helicase Machinery gene
  GE021_RS09065 (GE021_009055) - 1849993..1850481 (+) 489 WP_125074126.1 hypothetical protein -
  GE021_RS09070 (GE021_009060) dinB 1850573..1851667 (-) 1095 WP_125074127.1 DNA polymerase IV -
  GE021_RS09075 (GE021_009065) pflB 1851876..1854203 (+) 2328 WP_003045209.1 formate C-acetyltransferase -
  GE021_RS09080 (GE021_009070) - 1854326..1854766 (+) 441 WP_164406420.1 GNAT family N-acetyltransferase -

Sequence

Protein


Download         Length: 810 a.a.        Molecular weight: 91049.77 Da        Isoelectric Point: 4.9851

>NTDB_id=394652 GE021_RS09060 WP_164406422.1 1847471..1849903(+) (recD/recD2/recDB) [Streptococcus canis strain HL_77_1]
MEYFFTGTVDRIIFENQANFFKILLLTIEDTDSDVDDIDIIITGTMADIVEGEDYTFWGELTQHPKYGQQVKLSRYQKMK
PNSSGLVTYFSSDHFKGIGKKTAEKIIALYGNNTIDHILEDPSKLESISSLSKVNRQAFVAKLKLNYGTEQIIAGLAELG
LSNRFAFQAFDQYKEEAIELIKENPYRLVEDLQGFGFKMADALAENLGIESDSPKRFRAALLHCLLEESINQGDTYVQAR
QLLSVTINLLEDARQVECHPAAVAQQLTSLIEEGNIKNIDTKLFDTSLYFAEEGIAKTIRRLLDQPLDSHLNSEAIQKEI
QALQDKFGITYDQVQQEAIEKALTSKVFLLTGGPGTGKTTVIRGILQAYAKLHQLDLDNKDLPILLAAPTGRAARRMNEL
TGLPSATIHRHLGLTGDNDYQTMEDYLDCDLLIVDEFSMVDTWLANQLLSAVSSTTQVIIVGDSDQLPSVGPGQVLADLL
KVKNLPQIALRKIFRQSQESTIVALADQMRRGILAPDFREKKADRSYFEAQAAFIPDMIQKIVLSAIKSGIPAEEIQILA
PMYKGQAGINHLNQLMQELLNPLEEQTEFLFNDTRFRKGDKVLHLVNDAQLNVFNGDIGYITDLIPAKYTESKQDELVIA
FDGSEVTYPRNEWLKLTLAYAMSIHKSQGSEFQVVILPITRQSGRLLQRNLIYTAITRSKSKLIMLGELAAFDYAIHNEG
VKRQTYLVERFQEQEPEEKTQTNQTQADLEKPANHLNGQVISRSKAHSTKANLTKQQQPLCVLTPDNFLTIDPMIGITKD
DICHFFQKNP

Nucleotide


Download         Length: 2433 bp        

>NTDB_id=394652 GE021_RS09060 WP_164406422.1 1847471..1849903(+) (recD/recD2/recDB) [Streptococcus canis strain HL_77_1]
ATGGAATACTTTTTCACAGGTACTGTTGACCGTATTATCTTTGAAAACCAAGCTAATTTTTTCAAAATTCTTCTCCTTAC
AATCGAGGATACTGACAGTGATGTGGATGATATAGACATCATTATCACTGGAACCATGGCTGACATTGTGGAAGGGGAAG
ATTATACCTTTTGGGGAGAATTAACCCAGCATCCTAAGTATGGTCAACAAGTCAAGCTGAGCCGTTATCAAAAAATGAAA
CCCAATTCCTCTGGTTTAGTGACTTATTTTTCTAGTGACCATTTCAAGGGGATTGGGAAAAAAACAGCTGAAAAGATTAT
TGCTCTCTATGGCAATAACACCATTGACCATATTTTAGAAGACCCCAGTAAACTGGAAAGCATTTCTAGCCTGTCCAAGG
TCAACCGCCAAGCCTTTGTTGCCAAACTCAAATTAAATTATGGTACCGAACAAATTATTGCTGGCTTAGCAGAGTTAGGC
TTAAGCAACCGTTTTGCCTTTCAAGCCTTTGACCAATACAAGGAAGAAGCCATTGAGCTGATTAAGGAAAATCCTTACCG
GCTAGTCGAAGACCTTCAAGGTTTTGGGTTTAAAATGGCTGATGCCCTAGCTGAAAACTTAGGAATTGAAAGCGACTCTC
CTAAACGTTTTCGGGCAGCTCTTTTGCATTGTCTCTTGGAAGAATCAATCAACCAAGGAGATACTTACGTTCAAGCACGC
CAATTACTATCTGTTACCATTAATCTCTTAGAAGATGCCCGTCAAGTAGAATGTCATCCAGCTGCTGTTGCCCAACAATT
AACCTCCTTGATTGAAGAGGGCAATATTAAAAATATTGACACCAAGCTTTTTGATACCAGCCTTTACTTTGCTGAGGAAG
GAATTGCCAAAACTATCAGAAGACTTTTAGACCAACCTCTGGACAGTCACCTTAACTCTGAGGCTATCCAGAAAGAAATT
CAAGCCCTTCAAGATAAATTCGGCATCACCTATGATCAAGTCCAACAAGAAGCTATTGAGAAGGCTTTGACCAGCAAAGT
ATTTCTACTAACAGGGGGACCAGGTACTGGAAAAACCACTGTTATTCGAGGAATCTTGCAAGCCTATGCCAAGCTTCACC
AGCTTGACCTTGACAACAAAGATCTTCCTATTTTATTAGCAGCCCCAACAGGACGAGCAGCTCGGCGGATGAATGAGCTG
ACCGGACTTCCTAGTGCTACTATCCATAGACACCTCGGTTTAACTGGCGATAATGACTATCAGACCATGGAAGACTATTT
GGATTGTGATTTGCTGATTGTGGATGAATTCTCCATGGTTGATACTTGGCTTGCCAATCAACTGCTATCTGCTGTCAGCT
CGACCACTCAGGTCATTATTGTGGGCGATAGTGACCAGCTGCCTTCTGTCGGCCCTGGGCAAGTCTTGGCAGATCTTTTA
AAGGTCAAAAATCTCCCACAAATTGCCCTAAGGAAAATCTTTCGCCAATCTCAAGAATCAACCATTGTGGCATTGGCAGA
TCAGATGCGTCGTGGTATTTTAGCTCCAGATTTTAGAGAAAAAAAGGCTGATCGTTCTTATTTTGAAGCACAAGCAGCCT
TTATCCCTGACATGATTCAAAAAATTGTGCTTTCTGCTATCAAAAGCGGTATTCCTGCTGAAGAAATTCAAATTTTAGCC
CCTATGTATAAGGGACAGGCTGGCATCAATCATCTCAATCAACTCATGCAAGAGCTCCTCAATCCCTTAGAAGAGCAGAC
AGAATTTCTGTTCAACGACACCCGCTTCCGTAAGGGGGATAAGGTTTTGCACTTGGTCAATGATGCTCAACTCAATGTCT
TTAATGGCGATATTGGTTATATCACTGACTTGATTCCAGCCAAATACACTGAATCCAAGCAGGACGAATTAGTTATAGCA
TTTGACGGCAGCGAAGTAACTTATCCTCGAAATGAATGGCTTAAATTAACCCTTGCCTATGCCATGAGCATTCATAAGTC
GCAAGGTAGTGAATTTCAGGTTGTTATTTTGCCAATCACCCGTCAAAGTGGACGACTGCTGCAACGCAATCTTATTTACA
CAGCTATCACACGTTCCAAAAGCAAACTCATTATGCTAGGAGAACTGGCCGCTTTTGATTATGCCATTCACAATGAGGGC
GTCAAGCGACAAACTTATTTGGTGGAACGCTTCCAAGAGCAAGAACCTGAAGAAAAAACTCAGACCAACCAAACACAAGC
TGACCTCGAAAAACCTGCAAATCACTTAAATGGTCAGGTAATCAGTCGTTCAAAAGCACATTCAACCAAGGCTAACCTGA
CCAAGCAACAGCAGCCCCTTTGTGTCTTAACTCCTGATAATTTTCTTACCATTGATCCGATGATAGGGATTACAAAAGAC
GACATCTGCCACTTTTTTCAGAAAAATCCCTAA

Domains

Predicted by InterProScan.

ATP-dependent RecD-like DNA helicase SH3 domain (SH3_13)

(572-641)

UvrD-like helicase C-terminal domain (UvrD_C_2)

(659-705)

AAA domain (AAA_30)

(331-525)

Helix-hairpin-helix containing domain (HHH_RecD2)

(147-236)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recD/recD2/recDB Bacillus subtilis subsp. subtilis str. 168

41.261

93.951

0.388

Multiple sequence alignment