Detailed information    

insolico Bioinformatically predicted

Overview

Name   codY   Type   Regulator
Locus tag   GE021_RS08825 Genome accession   NZ_CP053792
Coordinates   1787510..1788292 (-) Length   260 a.a.
NCBI ID   WP_003045096.1    Uniprot ID   -
Organism   Streptococcus canis strain HL_77_1     
Function   repress the expression of comX (predicted from homology)   
Competence regulation

Genomic Context

Location: 1782510..1793292
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GE021_RS08805 (GE021_008795) - 1784300..1785139 (-) 840 WP_164406466.1 pyruvate, water dikinase regulatory protein -
  GE021_RS08810 (GE021_008800) - 1785160..1785780 (-) 621 WP_164227954.1 helix-turn-helix transcriptional regulator -
  GE021_RS08815 (GE021_008805) - 1786218..1786529 (-) 312 WP_003045089.1 rhodanese-like domain-containing protein -
  GE021_RS08820 (GE021_008810) - 1786832..1787383 (-) 552 WP_003045093.1 cysteine hydrolase family protein -
  GE021_RS08825 (GE021_008815) codY 1787510..1788292 (-) 783 WP_003045096.1 GTP-sensing pleiotropic transcriptional regulator CodY Regulator
  GE021_RS08830 (GE021_008820) - 1788546..1789760 (-) 1215 WP_093998814.1 pyridoxal phosphate-dependent aminotransferase -
  GE021_RS08835 (GE021_008825) - 1790088..1790540 (+) 453 WP_003045102.1 universal stress protein -
  GE021_RS08840 (GE021_008830) - 1790875..1792263 (-) 1389 WP_093998816.1 Cof-type HAD-IIB family hydrolase -

Sequence

Protein


Download         Length: 260 a.a.        Molecular weight: 28773.86 Da        Isoelectric Point: 4.4047

>NTDB_id=394646 GE021_RS08825 WP_003045096.1 1787510..1788292(-) (codY) [Streptococcus canis strain HL_77_1]
MPNLLEKTRQITSILQRSVDSLETELPYNAMASRLADIIDCNACIINGGGTLLGYAMKYRTNTDRVEEFFEAKQFPDTYV
KAASRVYDTEANLSVENELTIFPVESKDIYPDGLTTIAPIYGGGMRLGSLIIWRNDNEFSDDDLILVEISSTVVGIQLLN
LQTENLEETIRKQTAINMAINTLSYSEMKAVAAILGELDGNEGRLTASVIADRIGITRSVIVNALRKLESAGIIESRSLG
MKGTYLKVINEGIFDKLKEF

Nucleotide


Download         Length: 783 bp        

>NTDB_id=394646 GE021_RS08825 WP_003045096.1 1787510..1788292(-) (codY) [Streptococcus canis strain HL_77_1]
ATGCCTAACTTATTAGAAAAAACTCGTCAAATTACGTCTATTCTGCAGCGTTCCGTAGATAGCTTGGAGACAGAACTCCC
ATACAATGCCATGGCATCTCGCTTAGCAGATATTATTGACTGTAATGCTTGTATTATTAACGGTGGCGGAACCCTACTTG
GTTATGCCATGAAATATAGAACCAACACTGACCGTGTGGAAGAATTTTTTGAAGCAAAACAATTTCCAGATACTTATGTA
AAGGCGGCTAGTCGAGTTTACGACACGGAAGCCAATCTTTCAGTTGAAAATGAATTAACCATTTTCCCAGTAGAATCTAA
GGACATTTACCCTGATGGCTTGACCACCATTGCTCCAATTTACGGTGGTGGGATGCGTCTTGGTTCTCTGATTATCTGGC
GAAATGACAATGAGTTTAGCGATGATGATTTGATTTTGGTGGAAATTTCAAGCACTGTTGTAGGGATTCAATTATTGAAC
CTTCAAACAGAAAACTTGGAAGAGACCATCCGTAAACAAACGGCTATCAATATGGCTATTAATACCTTATCTTATTCCGA
AATGAAAGCTGTCGCAGCTATTCTGGGAGAATTAGATGGTAACGAAGGTCGCTTAACCGCTTCTGTTATTGCTGACCGTA
TTGGCATTACCCGTTCTGTTATCGTCAATGCCCTTCGTAAATTAGAAAGTGCTGGGATTATTGAGAGCCGTTCGCTTGGA
ATGAAGGGAACCTATCTCAAAGTTATCAACGAAGGTATTTTTGATAAATTAAAAGAATTTTAA

Domains

Predicted by InterProScan.

CodY GAF-like domain (CodY)

(3-182)

CodY helix-turn-helix domain (HTH_CodY)

(202-260)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  codY Lactococcus lactis subsp. lactis strain DGCC12653

66.537

98.846

0.658
  codY Bacillus subtilis subsp. subtilis str. 168

52.632

95

0.5