Detailed information    

insolico Bioinformatically predicted

Overview

Name   comGE   Type   Machinery gene
Locus tag   GE021_RS00835 Genome accession   NZ_CP053792
Coordinates   144017..144292 (+) Length   91 a.a.
NCBI ID   WP_125073627.1    Uniprot ID   -
Organism   Streptococcus canis strain HL_77_1     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 139017..149292
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GE021_RS00810 (GE021_000810) - 140947..141312 (+) 366 WP_125073632.1 DUF1033 family protein -
  GE021_RS00815 (GE021_000815) comGA 141399..142340 (+) 942 WP_125073631.1 competence type IV pilus ATPase ComGA Machinery gene
  GE021_RS00820 (GE021_000820) comGB 142273..143307 (+) 1035 WP_172774157.1 competence type IV pilus assembly protein ComGB Machinery gene
  GE021_RS00825 (GE021_000825) comGC 143310..143636 (+) 327 WP_125073629.1 competence type IV pilus major pilin ComGC Machinery gene
  GE021_RS00830 (GE021_000830) comGD 143611..144039 (+) 429 WP_260436826.1 competence type IV pilus minor pilin ComGD Machinery gene
  GE021_RS00835 (GE021_000835) comGE 144017..144292 (+) 276 WP_125073627.1 competence type IV pilus minor pilin ComGE Machinery gene
  GE021_RS00840 (GE021_000840) comGF 144273..144713 (+) 441 WP_125073626.1 competence type IV pilus minor pilin ComGF Machinery gene
  GE021_RS00845 (GE021_000845) comGG 144691..145071 (+) 381 WP_125073625.1 competence type IV pilus minor pilin ComGG -
  GE021_RS00850 (GE021_000850) comGH 145121..146074 (+) 954 WP_125073624.1 class I SAM-dependent methyltransferase Machinery gene
  GE021_RS00855 (GE021_000855) - 146133..147329 (+) 1197 WP_093998734.1 acetate kinase -
  GE021_RS00860 (GE021_000860) - 147649..147855 (+) 207 WP_125073623.1 helix-turn-helix transcriptional regulator -
  GE021_RS11180 - 148013..148450 (+) 438 WP_164406320.1 hypothetical protein -

Sequence

Protein


Download         Length: 91 a.a.        Molecular weight: 10251.87 Da        Isoelectric Point: 8.0000

>NTDB_id=394579 GE021_RS00835 WP_125073627.1 144017..144292(+) (comGE) [Streptococcus canis strain HL_77_1]
MKGYIALESVMATGLLFSIVILVLTSLQQGQAALTHYRNQQEKLNLALMAVQTGREEVTLNGCYITVRRTENQISVRDDK
GEVIRIEQKDK

Nucleotide


Download         Length: 276 bp        

>NTDB_id=394579 GE021_RS00835 WP_125073627.1 144017..144292(+) (comGE) [Streptococcus canis strain HL_77_1]
GTGAAAGGTTACATAGCCCTTGAAAGTGTGATGGCGACAGGGCTCTTATTTTCCATTGTTATCCTGGTTTTGACTAGTTT
ACAGCAAGGTCAGGCTGCCCTAACCCATTATCGCAATCAGCAAGAAAAACTGAATTTGGCGCTGATGGCAGTACAGACAG
GCCGTGAAGAAGTCACACTCAATGGCTGTTATATTACTGTTCGGAGAACGGAAAATCAGATTAGTGTTCGGGACGATAAA
GGAGAAGTGATTAGGATTGAACAAAAGGACAAATAG

Domains

Predicted by InterProScan.

Type II secretory pathway pseudopilin (ComGE)

(5-86)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGE Streptococcus mutans UA140

39.326

97.802

0.385
  comGE Streptococcus mutans UA159

39.326

97.802

0.385