Detailed information    

insolico Bioinformatically predicted

Overview

Name   mutS/mutS2   Type   Machinery gene
Locus tag   GE022_RS08710 Genome accession   NZ_CP053790
Coordinates   1789723..1792059 (-) Length   778 a.a.
NCBI ID   WP_164405120.1    Uniprot ID   -
Organism   Streptococcus canis strain HL_77_2     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1784723..1797059
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GE022_RS10760 - 1786037..1786330 (-) 294 WP_093998844.1 hypothetical protein -
  GE022_RS08695 (GE022_008685) mutY 1786501..1787664 (+) 1164 WP_164405119.1 A/G-specific adenine glycosylase -
  GE022_RS08700 (GE022_008690) trxA 1787762..1788076 (-) 315 WP_003045187.1 thioredoxin -
  GE022_RS08705 (GE022_008695) - 1788303..1789622 (+) 1320 WP_164227935.1 FAD-containing oxidoreductase -
  GE022_RS08710 (GE022_008700) mutS/mutS2 1789723..1792059 (-) 2337 WP_164405120.1 endonuclease MutS2 Machinery gene
  GE022_RS08715 (GE022_008705) - 1792223..1792768 (-) 546 WP_125074122.1 CvpA family protein -
  GE022_RS08720 (GE022_008710) - 1792771..1793079 (-) 309 WP_003045196.1 hypothetical protein -
  GE022_RS08725 (GE022_008715) rnhC 1793226..1794134 (+) 909 WP_164405121.1 ribonuclease HIII -
  GE022_RS08730 (GE022_008720) lepB 1794145..1794738 (+) 594 WP_003045201.1 signal peptidase I -

Sequence

Protein


Download         Length: 778 a.a.        Molecular weight: 87365.03 Da        Isoelectric Point: 6.7701

>NTDB_id=394548 GE022_RS08710 WP_164405120.1 1789723..1792059(-) (mutS/mutS2) [Streptococcus canis strain HL_77_2]
MDKKILEQLDFDKVKEHFRTYLQTEQGSRELDQLEPLTNHDKIKHSFLEIEEMAAIFVEQHNFALGSLSDISVSMRRLEL
EADLNITELLAVKKLLQVSAEASRFYTELENVELRALKLLFEKLELFPNLQGGLQAINDSGFVESFANPELEKIRRSISD
KEHASRQVLQEILKKQADYLSESLIASRNGRSVLPVKNTFRNKVAGVVHDMSASGNTVYIEPRALVQLNEELTQLQAAER
YEVARVLQELSDMLRPHSRALANNAWLLGHLDFVRAKYLYLQDKKATVPTISDDKSLQLLNVRHPLLQNPVANDLHFSKD
LAVIVITGPNTGGKTIMLKTLGLAQLMAQSGLPILADKGSKVAVFNGIFADIGDEQSIEQSLSTFSSHMTHIVAILNQAD
TESLVLFDELGAGTDPQEGASLAMAILEQLRLTNIKTMATTHYPELKAYGIETPYVENASMEFDSISLKPTYRFMQGVPG
RSNAFEIARRLGLAEHIVNEAQSMTDTDSDVNRIIEQLEKQTLESRKRLDHIKEVEQDNLKFNRAVKKLYHDFSQAKDKE
IEKARLEAREIVDMALAESDSILSRLHDKAALKPHEVIEAKGQLKQLVPERDLAQNKVLKKAKQLRAPRVGDDIIVTAYG
QRGTLVKELKDKRWESQVGLIKMTLSEDEFSLVKVVEEAQKPKKKPVKVVKKATAGTEPRARLDLRGKRYEEAMQELDSF
IDQALLNNMSQVDIIHGIGTGVIREAVTKYLRRNKHVKSFGYAPQNAGGSGCTIANLG

Nucleotide


Download         Length: 2337 bp        

>NTDB_id=394548 GE022_RS08710 WP_164405120.1 1789723..1792059(-) (mutS/mutS2) [Streptococcus canis strain HL_77_2]
ATGGATAAAAAGATTTTAGAACAGTTAGACTTTGACAAGGTTAAGGAACACTTTCGGACTTACTTGCAAACAGAGCAAGG
TAGCCGTGAGTTGGACCAACTGGAGCCCTTAACCAATCATGACAAAATCAAACATTCTTTCTTAGAGATCGAGGAGATGG
CTGCGATTTTTGTGGAGCAGCATAACTTTGCTTTAGGAAGTCTATCAGATATTTCGGTTAGCATGCGACGTCTGGAATTA
GAAGCCGATTTAAACATTACTGAATTGTTGGCGGTCAAAAAATTGCTGCAGGTATCAGCTGAAGCTAGCCGTTTTTACAC
TGAGTTAGAAAATGTTGAACTCAGGGCTCTAAAGCTTTTATTTGAGAAGTTAGAGCTCTTTCCTAACCTCCAGGGCGGCC
TTCAGGCGATTAATGATAGCGGTTTTGTGGAAAGTTTTGCTAACCCAGAATTAGAAAAGATTCGCCGCAGTATTTCAGAT
AAAGAACATGCCAGTCGTCAAGTGTTACAGGAGATCCTCAAAAAACAGGCTGACTATTTGTCAGAAAGTTTGATTGCTAG
TCGAAATGGACGCAGCGTCTTACCTGTCAAAAACACTTTTCGTAATAAGGTGGCTGGAGTGGTTCACGATATGTCAGCTT
CTGGTAATACAGTCTATATTGAACCAAGAGCCCTTGTGCAGCTGAATGAAGAATTGACACAGTTGCAGGCAGCTGAGCGC
TATGAGGTGGCGCGTGTCCTTCAAGAATTATCAGACATGCTTCGTCCTCACAGTCGGGCTCTTGCAAATAATGCTTGGTT
GTTGGGGCATTTGGATTTTGTTCGGGCTAAGTACCTTTATCTGCAAGACAAAAAGGCAACGGTTCCAACCATTTCAGATG
ACAAAAGTTTACAGTTGTTAAATGTGCGCCACCCTCTTTTGCAAAATCCTGTTGCCAACGATTTGCATTTTTCTAAAGAC
TTAGCTGTTATTGTCATTACAGGTCCTAATACAGGTGGGAAGACCATTATGTTGAAAACACTTGGTTTAGCACAGTTAAT
GGCACAATCTGGACTTCCTATTTTGGCTGACAAAGGTTCCAAGGTGGCTGTTTTTAATGGTATTTTTGCGGACATCGGAG
ATGAGCAGTCGATTGAGCAGAGCTTGTCAACCTTCTCCAGTCACATGACGCATATTGTGGCTATTTTGAATCAGGCTGAC
ACAGAAAGTTTGGTGCTCTTTGACGAATTGGGGGCAGGCACGGATCCCCAAGAAGGGGCTAGTTTAGCTATGGCCATTCT
GGAACAATTACGTTTGACCAATATTAAAACCATGGCAACCACGCATTATCCAGAATTAAAGGCTTATGGTATTGAAACAC
CCTACGTGGAAAATGCCAGCATGGAGTTTGACAGCATCAGCTTAAAACCAACTTACCGCTTTATGCAAGGGGTACCTGGC
CGATCAAACGCTTTTGAAATTGCTAGACGACTTGGTTTAGCAGAACACATCGTCAATGAAGCTCAAAGCATGACAGATAC
TGATAGTGATGTCAACCGCATTATTGAACAGCTGGAAAAACAAACCTTGGAAAGCCGTAAGCGTCTGGACCACATCAAAG
AAGTAGAGCAAGACAACCTCAAATTCAACCGTGCGGTTAAAAAGCTGTACCATGATTTTTCGCAGGCCAAAGACAAGGAA
ATTGAAAAAGCAAGGCTTGAAGCTCGGGAAATTGTTGATATGGCCTTGGCAGAAAGTGACAGTATCCTAAGCCGATTGCA
TGATAAGGCTGCGCTCAAACCTCATGAAGTTATTGAAGCCAAGGGACAACTCAAACAACTCGTCCCAGAAAGAGATTTAG
CGCAAAACAAGGTTTTGAAAAAAGCCAAACAATTACGAGCTCCTCGTGTAGGAGATGACATTATTGTAACGGCCTACGGG
CAACGCGGAACCTTGGTTAAAGAACTCAAGGACAAGAGATGGGAATCCCAAGTCGGTCTCATTAAAATGACTCTCAGTGA
AGACGAATTCAGCCTTGTTAAGGTTGTTGAAGAAGCACAAAAGCCTAAGAAAAAGCCAGTCAAGGTGGTTAAAAAAGCGA
CTGCCGGCACTGAACCACGTGCTCGTCTGGATTTGCGTGGGAAACGTTATGAGGAGGCCATGCAAGAACTTGACAGCTTT
ATCGATCAAGCACTATTAAACAATATGAGCCAAGTAGATATTATTCACGGTATTGGGACTGGTGTGATTCGTGAAGCCGT
TACCAAATACCTCAGACGAAACAAGCATGTCAAAAGCTTTGGCTATGCTCCACAAAATGCAGGTGGATCAGGGTGTACCA
TTGCCAATTTAGGTTAA

Domains

Predicted by InterProScan.

MutS domain V (MutS_V)

(324-505)

Smr domain (Smr)

(703-776)

MutS2 and Smr-associated SH3 domain (MSSS)

(630-669)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  mutS/mutS2 Bacillus subtilis subsp. subtilis str. 168

39.747

100

0.404