Detailed information    

insolico Bioinformatically predicted

Overview

Name   comD   Type   Machinery gene
Locus tag   HICON_RS03805 Genome accession   NC_014922
Coordinates   772363..772776 (+) Length   137 a.a.
NCBI ID   WP_013527437.1    Uniprot ID   A0AAV2U1P3
Organism   Haemophilus influenzae F3047     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 767363..777776
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HICON_RS03785 (HICON_09750) - 767851..770445 (-) 2595 WP_013527434.1 penicillin-binding protein 1A -
  HICON_RS03790 (HICON_09760) comA 770544..771341 (+) 798 WP_013527435.1 pilus assembly protein PilM Machinery gene
  HICON_RS03795 (HICON_09770) comB 771342..771848 (+) 507 WP_006995134.1 competence protein ComB Machinery gene
  HICON_RS03800 comC 771845..772366 (+) 522 WP_005662592.1 competence protein ComC Machinery gene
  HICON_RS03805 (HICON_09790) comD 772363..772776 (+) 414 WP_013527437.1 pilus assembly protein PilP Machinery gene
  HICON_RS03810 (HICON_09800) comE 772786..774123 (+) 1338 WP_013527438.1 type IV pilus secretin PilQ Machinery gene
  HICON_RS03815 (HICON_09810) - 774136..774822 (+) 687 WP_011272045.1 ComF family protein -
  HICON_RS03820 (HICON_09820) nfuA 774898..775494 (+) 597 WP_005649300.1 Fe-S biogenesis protein NfuA -
  HICON_RS03825 (HICON_09830) nudC 775561..776355 (+) 795 WP_005686893.1 NAD(+) diphosphatase -
  HICON_RS03830 (HICON_09840) - 776391..776981 (+) 591 WP_005686892.1 YjaG family protein -
  HICON_RS03835 (HICON_09850) - 777121..777393 (+) 273 WP_005630954.1 HU family DNA-binding protein -

Sequence

Protein


Download         Length: 137 a.a.        Molecular weight: 15629.73 Da        Isoelectric Point: 4.4355

>NTDB_id=39454 HICON_RS03805 WP_013527437.1 772363..772776(+) (comD) [Haemophilus influenzae F3047]
MKYWFFLTALLFINCTWGQDPFDKTQRNRSQFDNAQTVMEQTEIISSDVPNNLCGADENRQAAEIPLNALKLVGVVISKD
KAFALLQDQALQVYSVLEGVDVAQEGYIVEKINQNNVQFMRKLGEQCDSSEWKKLSF

Nucleotide


Download         Length: 414 bp        

>NTDB_id=39454 HICON_RS03805 WP_013527437.1 772363..772776(+) (comD) [Haemophilus influenzae F3047]
ATGAAGTATTGGTTTTTCCTAACAGCATTGCTTTTTATAAATTGCACTTGGGGACAAGATCCTTTCGATAAAACACAGCG
TAACCGTTCTCAGTTTGATAACGCACAAACAGTAATGGAACAGACAGAAATAATTTCCTCAGATGTACCTAATAATCTAT
GCGGAGCGGATGAAAATCGCCAAGCGGCTGAAATTCCTTTGAACGCTTTAAAATTGGTGGGCGTAGTGATTTCTAAAGAT
AAAGCCTTTGCCTTATTGCAAGATCAGGCTTTGCAAGTTTACAGCGTTTTAGAGGGCGTTGATGTGGCTCAAGAGGGCTA
TATTGTAGAAAAAATCAACCAAAACAATGTTCAATTTATGCGCAAGCTAGGAGAGCAATGTGATAGTAGTGAATGGAAAA
AATTAAGTTTTTAA

Domains

Predicted by InterproScan.

Pilus assembly protein, PilP (PilP)

(26-123)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comD Haemophilus influenzae Rd KW20

94.891

100

0.949
  comD Haemophilus influenzae 86-028NP

94.161

100

0.942

Multiple sequence alignment