Detailed information
Bioinformatically predicted
Overview
| Name | rarA | Type | Machinery gene |
| Locus tag | RIA_RS01305 | Genome accession | NC_017569 |
| Coordinates | 245608..246885 (-) | Length | 425 a.a. |
| NCBI ID | WP_004917728.1 | Uniprot ID | - |
| Organism | Riemerella anatipestifer RA-GD | ||
| Function | homologous recombination (predicted from homology) Homologous recombination |
||
Genomic Context
Location: 240608..251885
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| RIA_RS01280 (RIA_0276) | - | 241110..242858 (+) | 1749 | WP_004917741.1 | TrkH family potassium uptake protein | - |
| RIA_RS01285 (RIA_0277) | - | 242866..243558 (+) | 693 | WP_013447221.1 | TrkA family potassium uptake protein | - |
| RIA_RS01290 (RIA_0278) | - | 243562..244182 (+) | 621 | WP_004917736.1 | CoA pyrophosphatase | - |
| RIA_RS10550 | - | 244211..244990 (+) | 780 | Protein_267 | lysophospholipid acyltransferase family protein | - |
| RIA_RS10555 | - | 245000..245611 (+) | 612 | WP_004917730.1 | L-threonylcarbamoyladenylate synthase | - |
| RIA_RS01305 (RIA_0280) | rarA | 245608..246885 (-) | 1278 | WP_004917728.1 | replication-associated recombination protein A | Machinery gene |
| RIA_RS01310 (RIA_0281) | yidD | 246965..247219 (+) | 255 | WP_013447220.1 | membrane protein insertion efficiency factor YidD | - |
| RIA_RS01315 (RIA_0282) | lgt | 247227..248078 (+) | 852 | WP_004917725.1 | prolipoprotein diacylglyceryl transferase | - |
| RIA_RS01320 (RIA_0283) | mscL | 248219..248590 (+) | 372 | WP_004917723.1 | large conductance mechanosensitive channel protein MscL | - |
| RIA_RS01325 (RIA_0284) | - | 248666..249322 (+) | 657 | WP_004917720.1 | YggS family pyridoxal phosphate-dependent enzyme | - |
| RIA_RS01330 (RIA_0285) | - | 249359..250543 (+) | 1185 | WP_004917716.1 | sigma-54 dependent transcriptional regulator | - |
Sequence
Protein
Download Length: 425 a.a. Molecular weight: 47550.20 Da Isoelectric Point: 6.9193
>NTDB_id=39454 RIA_RS01305 WP_004917728.1 245608..246885(-) (rarA) [Riemerella anatipestifer RA-GD]
MNSNIPLAEKLRPKTLDEMLGQEHLTGKDGTIRKMLDTDRLNSLILWGPPGTGKTTLAEILSEQSGRKFFKLSAVSSGVK
EVREVIDDAKKQHLFSGKSPILFIDEIHRFNKSQQDSLLHAVEKGWVILIGATTENPSFEVVSALLSRSQVYILKPLSYE
KLEELATIAVARFNQDENTDFTIENNQGFIQYSGGDARKLINSVEWVLNQYKGSGQNQLSSETILKVLQETIPVYDKNGE
QHYDVISAFIKSIRGSDVNAALYWLGRMLVGGEDIKFIARRLLILAAEDIGLANPNALTMANSCFQSVNVIGYPESRIIL
SECVIYLAASPKSNSAYQAINEALALAKKTAHLPVPLHLRNAPTKLMKEMDYGKDYRYAHAYEGSFVSQEFFPEELSGVS
FYRSGDNATERKIKEQISKKWGDKY
MNSNIPLAEKLRPKTLDEMLGQEHLTGKDGTIRKMLDTDRLNSLILWGPPGTGKTTLAEILSEQSGRKFFKLSAVSSGVK
EVREVIDDAKKQHLFSGKSPILFIDEIHRFNKSQQDSLLHAVEKGWVILIGATTENPSFEVVSALLSRSQVYILKPLSYE
KLEELATIAVARFNQDENTDFTIENNQGFIQYSGGDARKLINSVEWVLNQYKGSGQNQLSSETILKVLQETIPVYDKNGE
QHYDVISAFIKSIRGSDVNAALYWLGRMLVGGEDIKFIARRLLILAAEDIGLANPNALTMANSCFQSVNVIGYPESRIIL
SECVIYLAASPKSNSAYQAINEALALAKKTAHLPVPLHLRNAPTKLMKEMDYGKDYRYAHAYEGSFVSQEFFPEELSGVS
FYRSGDNATERKIKEQISKKWGDKY
Nucleotide
Download Length: 1278 bp
>NTDB_id=39454 RIA_RS01305 WP_004917728.1 245608..246885(-) (rarA) [Riemerella anatipestifer RA-GD]
TTGAATTCAAATATCCCTTTAGCAGAGAAATTACGCCCTAAAACCTTAGATGAAATGCTTGGGCAAGAACATCTTACAGG
TAAAGACGGAACGATAAGAAAAATGTTGGATACTGACCGACTTAATTCTCTGATTTTATGGGGACCTCCAGGAACGGGTA
AAACTACCTTAGCAGAAATTCTTTCGGAGCAATCGGGACGAAAATTTTTTAAACTTTCTGCGGTTTCTAGTGGGGTAAAA
GAGGTAAGAGAAGTGATAGATGATGCCAAAAAGCAACATTTGTTTTCTGGTAAATCTCCTATTTTGTTTATAGATGAAAT
TCATAGATTTAACAAATCACAACAGGATTCTTTGCTTCACGCTGTGGAAAAAGGCTGGGTGATTCTGATAGGAGCAACTA
CCGAAAATCCTAGTTTTGAGGTCGTTTCGGCATTATTGTCTCGTTCTCAAGTTTATATTTTGAAACCATTGAGTTACGAA
AAATTGGAAGAACTGGCTACTATTGCGGTCGCTCGTTTTAATCAAGATGAAAATACAGATTTTACTATTGAAAACAATCA
AGGGTTTATACAATATTCGGGAGGCGATGCTAGAAAGCTCATTAACTCAGTAGAGTGGGTGCTTAATCAGTATAAAGGCT
CTGGGCAAAACCAGTTATCTAGTGAGACTATTCTGAAAGTTTTACAAGAAACTATACCTGTTTATGATAAAAATGGAGAG
CAGCATTATGATGTAATTTCAGCTTTTATAAAATCCATTAGAGGGAGCGATGTTAATGCTGCTTTGTATTGGTTAGGGAG
AATGCTCGTGGGGGGCGAAGATATTAAGTTTATTGCAAGGCGACTTTTGATATTGGCGGCAGAAGATATAGGCTTGGCTA
ATCCTAACGCTCTTACAATGGCTAACAGTTGTTTTCAGTCGGTTAATGTTATAGGTTATCCAGAATCTCGTATTATCCTT
AGCGAATGTGTGATTTATTTAGCGGCCTCACCTAAGAGTAATTCAGCGTATCAAGCTATCAATGAGGCGTTGGCGTTGGC
GAAAAAAACAGCTCATTTGCCTGTGCCGTTGCACCTAAGAAATGCACCTACAAAACTGATGAAAGAAATGGACTATGGTA
AAGATTACCGCTACGCTCACGCCTACGAGGGAAGTTTTGTATCACAAGAATTTTTTCCTGAAGAATTATCTGGAGTTTCT
TTTTATCGTTCAGGAGATAATGCCACCGAAAGAAAAATAAAAGAACAAATTTCTAAAAAGTGGGGCGATAAATACTAG
TTGAATTCAAATATCCCTTTAGCAGAGAAATTACGCCCTAAAACCTTAGATGAAATGCTTGGGCAAGAACATCTTACAGG
TAAAGACGGAACGATAAGAAAAATGTTGGATACTGACCGACTTAATTCTCTGATTTTATGGGGACCTCCAGGAACGGGTA
AAACTACCTTAGCAGAAATTCTTTCGGAGCAATCGGGACGAAAATTTTTTAAACTTTCTGCGGTTTCTAGTGGGGTAAAA
GAGGTAAGAGAAGTGATAGATGATGCCAAAAAGCAACATTTGTTTTCTGGTAAATCTCCTATTTTGTTTATAGATGAAAT
TCATAGATTTAACAAATCACAACAGGATTCTTTGCTTCACGCTGTGGAAAAAGGCTGGGTGATTCTGATAGGAGCAACTA
CCGAAAATCCTAGTTTTGAGGTCGTTTCGGCATTATTGTCTCGTTCTCAAGTTTATATTTTGAAACCATTGAGTTACGAA
AAATTGGAAGAACTGGCTACTATTGCGGTCGCTCGTTTTAATCAAGATGAAAATACAGATTTTACTATTGAAAACAATCA
AGGGTTTATACAATATTCGGGAGGCGATGCTAGAAAGCTCATTAACTCAGTAGAGTGGGTGCTTAATCAGTATAAAGGCT
CTGGGCAAAACCAGTTATCTAGTGAGACTATTCTGAAAGTTTTACAAGAAACTATACCTGTTTATGATAAAAATGGAGAG
CAGCATTATGATGTAATTTCAGCTTTTATAAAATCCATTAGAGGGAGCGATGTTAATGCTGCTTTGTATTGGTTAGGGAG
AATGCTCGTGGGGGGCGAAGATATTAAGTTTATTGCAAGGCGACTTTTGATATTGGCGGCAGAAGATATAGGCTTGGCTA
ATCCTAACGCTCTTACAATGGCTAACAGTTGTTTTCAGTCGGTTAATGTTATAGGTTATCCAGAATCTCGTATTATCCTT
AGCGAATGTGTGATTTATTTAGCGGCCTCACCTAAGAGTAATTCAGCGTATCAAGCTATCAATGAGGCGTTGGCGTTGGC
GAAAAAAACAGCTCATTTGCCTGTGCCGTTGCACCTAAGAAATGCACCTACAAAACTGATGAAAGAAATGGACTATGGTA
AAGATTACCGCTACGCTCACGCCTACGAGGGAAGTTTTGTATCACAAGAATTTTTTCCTGAAGAATTATCTGGAGTTTCT
TTTTATCGTTCAGGAGATAATGCCACCGAAAGAAAAATAAAAGAACAAATTTCTAAAAAGTGGGGCGATAAATACTAG
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| rarA | Bacillus subtilis subsp. subtilis str. 168 |
40.541 |
95.765 |
0.388 |