Detailed information    

insolico Bioinformatically predicted

Overview

Name   recO   Type   Machinery gene
Locus tag   FPL20_RS11830 Genome accession   NZ_CP045478
Coordinates   2245027..2245794 (+) Length   255 a.a.
NCBI ID   WP_003230055.1    Uniprot ID   A0AAE2SJ05
Organism   Bacillus subtilis strain JD-014     
Function   ssDNA annealing; plasmid transformation (predicted from homology)   
DNA processing Homologous recombination

Genomic Context

Location: 2240027..2250794
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FPL20_RS11800 (FPL20_GE02217) pgpH 2240323..2242458 (+) 2136 WP_010886570.1 cyclic-di-AMP phosphodiesterase PgpH -
  FPL20_RS11805 (FPL20_GE02218) ybeY 2242459..2242932 (+) 474 WP_003230039.1 rRNA maturation RNase YbeY -
  FPL20_RS11810 (FPL20_GE02219) unpK 2242913..2243284 (+) 372 WP_004398824.1 diacylglycerol kinase family protein -
  FPL20_RS11815 (FPL20_GE02220) - 2243403..2243813 (+) 411 WP_003230049.1 cytidine deaminase -
  FPL20_RS11820 (FPL20_GE02221) era 2243794..2244699 (+) 906 WP_003230051.1 GTPase Era -
  FPL20_RS11825 (FPL20_GE02222) yqzL 2244847..2244990 (+) 144 WP_003230053.1 YqzL family protein -
  FPL20_RS11830 (FPL20_GE02223) recO 2245027..2245794 (+) 768 WP_003230055.1 DNA repair protein RecO Machinery gene
  FPL20_RS11835 (FPL20_GE02224) glyQ 2246091..2246978 (+) 888 WP_003226213.1 glycine--tRNA ligase subunit alpha -
  FPL20_RS11840 (FPL20_GE02225) glyS 2246971..2249010 (+) 2040 WP_003230059.1 glycine--tRNA ligase subunit beta -
  FPL20_RS11845 (FPL20_GE02226) ccpN 2249143..2249781 (+) 639 WP_003237058.1 transcriptional regulator CcpN -
  FPL20_RS11850 (FPL20_GE02227) ppsR 2249807..2250619 (+) 813 WP_003230064.1 pyruvate, water dikinase regulatory protein -

Sequence

Protein


Download         Length: 255 a.a.        Molecular weight: 29328.02 Da        Isoelectric Point: 8.3080

>NTDB_id=394494 FPL20_RS11830 WP_003230055.1 2245027..2245794(+) (recO) [Bacillus subtilis strain JD-014]
MLTKCEGIVLRTNDYGETNKIVTLLTREHGKIGVMARGAKKPNSRLSAVSQPFLYGSFLMQKTSGLGTLQQGEMILSMRG
IREDLFLTAYAAYVAELVDRGTEEKKPNPYLFEFILESLKQLNEGTDPDVITFIVQMKMLGVMGLYPELNHCVHCKSQDG
TFHFSVRDNGFICHRCFEKDPYRIPIKPQTARLLRLFYYFDLSRLGNVSLKEETKAELKQVIDLYYEEYSGLYLKSKRFL
DQMESMKHLMGENKS

Nucleotide


Download         Length: 768 bp        

>NTDB_id=394494 FPL20_RS11830 WP_003230055.1 2245027..2245794(+) (recO) [Bacillus subtilis strain JD-014]
ATGCTGACAAAATGTGAAGGGATCGTTCTTCGCACAAATGATTACGGAGAGACGAATAAAATCGTAACATTACTGACAAG
AGAACACGGAAAAATAGGTGTTATGGCACGAGGCGCCAAAAAACCGAACAGCCGTTTATCAGCAGTCAGCCAGCCCTTTT
TGTATGGTTCTTTCTTAATGCAAAAAACATCGGGCCTCGGAACGCTTCAGCAGGGGGAAATGATCCTCAGCATGAGAGGC
ATCAGGGAAGACTTGTTTTTAACAGCATATGCTGCCTATGTTGCTGAGTTAGTCGACAGAGGCACAGAAGAAAAAAAGCC
AAATCCTTATTTATTTGAATTCATATTAGAATCATTAAAACAGTTGAATGAAGGAACAGATCCGGATGTTATCACCTTCA
TTGTTCAAATGAAGATGCTCGGTGTCATGGGCCTGTATCCTGAGCTGAATCATTGTGTACATTGTAAAAGCCAAGACGGA
ACCTTTCATTTCTCTGTTCGTGATAATGGTTTTATATGCCACCGCTGTTTTGAAAAAGATCCTTACAGGATACCGATTAA
ACCGCAAACGGCAAGGCTGTTAAGGCTCTTTTACTATTTTGATCTGTCGAGACTCGGCAATGTGTCCTTAAAAGAGGAAA
CAAAAGCTGAATTAAAGCAAGTGATTGATTTATATTACGAAGAATATTCGGGATTGTATTTAAAATCAAAGCGCTTTTTA
GATCAAATGGAAAGCATGAAACATCTTATGGGTGAAAACAAAAGTTGA

Domains

Predicted by InterproScan.

Recombination protein O C terminal (RecO_C)

(82-237)

Recombination protein O N terminal (RecO_N)

(1-75)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recO Bacillus subtilis subsp. subtilis str. 168

100

100

1

Multiple sequence alignment