Detailed information    

insolico Bioinformatically predicted

Overview

Name   rarA   Type   Machinery gene
Locus tag   STND_RS09340 Genome accession   NC_017563
Coordinates   1770487..1771755 (-) Length   422 a.a.
NCBI ID   WP_002952183.1    Uniprot ID   Q5M295
Organism   Streptococcus thermophilus ND03     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1765487..1776755
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  STND_RS09310 (STND_1898) - 1766805..1767317 (-) 513 WP_014608793.1 helix-turn-helix domain-containing protein -
  STND_RS12100 - 1767498..1767680 (+) 183 WP_024704268.1 hypothetical protein -
  STND_RS10875 (STND_1899) - 1767726..1768703 (+) 978 Protein_1768 replication initiation protein -
  STND_RS09325 (STND_1900) - 1768715..1768903 (+) 189 WP_000369785.1 DUF3173 domain-containing protein -
  STND_RS09330 (STND_1901) - 1768905..1770044 (+) 1140 WP_011681729.1 site-specific integrase -
  STND_RS09340 (STND_1902) rarA 1770487..1771755 (-) 1269 WP_002952183.1 replication-associated recombination protein A Machinery gene
  STND_RS09345 (STND_1903) rpmB 1771925..1772113 (+) 189 WP_002952184.1 50S ribosomal protein L28 -
  STND_RS09350 (STND_1904) - 1772240..1772506 (+) 267 WP_011681731.1 IreB family regulatory phosphoprotein -
  STND_RS09355 (STND_1905) ruvX 1772506..1772925 (+) 420 WP_011681732.1 Holliday junction resolvase RuvX -
  STND_RS09360 (STND_1906) - 1773034..1773339 (+) 306 WP_011681733.1 DUF1292 domain-containing protein -
  STND_RS09365 (STND_1907) - 1773552..1775198 (+) 1647 WP_014608794.1 membrane protein -

Sequence

Protein


Download         Length: 422 a.a.        Molecular weight: 46419.92 Da        Isoelectric Point: 6.8977

>NTDB_id=39445 STND_RS09340 WP_002952183.1 1770487..1771755(-) (rarA) [Streptococcus thermophilus ND03]
MPDNLALRMRPRSISEVIGQKHLVGEGKIIRRMVEANMLSSMILYGPPGIGKTSIASAIAGTTKFAFRTFNATVDSKKRL
QEIAEEAKFSGGLVLLLDEIHRLDKAKQDFLLPLLENGNIIMIGATTENPFFSVTPAIRSRVQIFELEPLSNEDIKEAIL
NVLGDKERGFAFEVHLDDDALDFIATATNGDLRSAYNSLDLAVMSTPASGNGQHHITLDIVENSLQRSYITMDKDGDGHY
DVLSALQKSIRGSDVNASLHYAARLVEAGDLPSLARRLTVIAYEDIGLANPDAQVHTVTALEAAQKIGFPEARILIANVV
IDLALSPKSNSAYKAMDAALADLRKSGNLPIPRHLRDGHYAGSKALGNAQDYKYPHAYPEKWVKQQYLPDKLRGVNYFQP
NETGKYERALGANKERIDKLSR

Nucleotide


Download         Length: 1269 bp        

>NTDB_id=39445 STND_RS09340 WP_002952183.1 1770487..1771755(-) (rarA) [Streptococcus thermophilus ND03]
ATGCCAGATAATCTTGCCTTACGCATGCGTCCACGTTCAATTTCAGAGGTGATTGGTCAGAAACATTTAGTTGGTGAAGG
TAAAATTATTCGCCGTATGGTAGAGGCGAATATGCTGTCGTCAATGATTCTCTACGGACCTCCAGGAATCGGGAAAACCT
CGATAGCCAGTGCTATTGCAGGAACAACAAAATTTGCTTTTAGAACTTTTAATGCCACTGTCGATAGCAAAAAACGTCTA
CAGGAAATTGCAGAAGAGGCTAAATTTTCAGGTGGTTTAGTTCTACTTCTAGATGAGATCCATCGTTTGGATAAAGCGAA
ACAAGATTTTTTGTTACCATTATTAGAGAACGGAAATATTATCATGATTGGTGCCACAACCGAGAATCCGTTTTTTTCTG
TAACACCAGCCATCCGTAGCCGTGTACAAATATTTGAGTTGGAACCACTCTCTAATGAAGATATCAAGGAAGCTATTTTG
AATGTTCTAGGGGACAAGGAGCGTGGCTTCGCCTTTGAGGTTCACTTAGATGATGATGCTCTAGATTTTATTGCGACAGC
TACTAATGGTGATTTACGATCGGCATATAATTCTTTGGATCTGGCTGTCATGTCGACACCAGCTTCAGGAAATGGTCAGC
ATCATATTACCCTAGACATAGTGGAAAATAGCTTACAACGCAGTTATATTACTATGGATAAAGACGGTGATGGGCACTAT
GATGTCCTTTCTGCCTTGCAAAAATCTATTCGAGGATCTGATGTTAATGCCAGTCTTCACTATGCGGCACGTTTGGTTGA
GGCAGGGGATTTGCCTAGTCTAGCACGTCGCTTGACTGTGATTGCCTATGAGGATATTGGTTTAGCTAATCCAGATGCAC
AAGTTCACACGGTCACAGCCTTGGAAGCTGCACAGAAAATAGGTTTTCCGGAGGCACGTATTTTGATTGCCAACGTAGTT
ATTGACTTAGCATTATCACCTAAGTCGAATTCGGCTTATAAGGCAATGGATGCTGCCCTGGCGGATCTTAGAAAGTCTGG
GAATTTACCTATTCCGCGTCATCTGAGAGATGGACACTATGCTGGAAGTAAGGCACTGGGTAATGCACAAGATTATAAGT
ATCCACATGCCTATCCTGAAAAGTGGGTTAAGCAACAATACCTTCCAGATAAATTAAGAGGAGTCAATTATTTCCAACCT
AATGAAACTGGGAAATACGAAAGAGCTCTTGGAGCTAATAAAGAACGAATCGATAAGTTATCTAGATAA

Domains

Predicted by InterProScan.

AAA C-terminal domain (AAA_assoc_2)

(173-251)

ATPase family associated with various cellular activities (AAA) (AAA)

(42-144)

MgsA AAA+ ATPase C terminal (MgsA_C)

(252-415)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q5M295

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rarA Bacillus subtilis subsp. subtilis str. 168

59.666

99.289

0.592

Multiple sequence alignment