Detailed information    

insolico Bioinformatically predicted

Overview

Name   recD/recD2/recDB   Type   Machinery gene
Locus tag   GE023_RS09025 Genome accession   NZ_CP053789
Coordinates   1828027..1830459 (+) Length   810 a.a.
NCBI ID   WP_164401557.1    Uniprot ID   -
Organism   Streptococcus canis strain HL_98_2     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1823027..1835459
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GE023_RS09005 (GE023_009000) - 1825451..1825996 (-) 546 WP_003045194.1 CvpA family protein -
  GE023_RS09010 (GE023_009005) - 1825999..1826307 (-) 309 WP_003045196.1 hypothetical protein -
  GE023_RS09015 (GE023_009010) rnhC 1826454..1827362 (+) 909 WP_093999376.1 ribonuclease HIII -
  GE023_RS09020 (GE023_009015) lepB 1827373..1827966 (+) 594 WP_164401559.1 signal peptidase I -
  GE023_RS09025 (GE023_009020) recD/recD2/recDB 1828027..1830459 (+) 2433 WP_164401557.1 ATP-dependent RecD-like DNA helicase Machinery gene
  GE023_RS09030 (GE023_009025) - 1830549..1831037 (+) 489 WP_003045206.1 hypothetical protein -
  GE023_RS09035 (GE023_009030) dinB 1831129..1832223 (-) 1095 WP_003045208.1 DNA polymerase IV -
  GE023_RS09040 (GE023_009035) pflB 1832432..1834759 (+) 2328 WP_003045209.1 formate C-acetyltransferase -
  GE023_RS09045 (GE023_009040) - 1834882..1835322 (+) 441 WP_003045211.1 GNAT family N-acetyltransferase -

Sequence

Protein


Download         Length: 810 a.a.        Molecular weight: 91250.01 Da        Isoelectric Point: 4.9512

>NTDB_id=394448 GE023_RS09025 WP_164401557.1 1828027..1830459(+) (recD/recD2/recDB) [Streptococcus canis strain HL_98_2]
MEYFFTGTVDRIIFENQANFFKILLLTIEDTDSDVDDIDIIITGTMADIVEGEDYTFWGELTQHPKYGQQVKLSRYQKMK
PNSSGLVTYFSSDHFKGIGKKTAEKIIALYGNNTIDHILEDPSKLESISSLSKVNRQAFVAKLKLNYGTEQIIAGLAELG
LSNRFAFQAFDQYKEEAIELIKENPYRLVEDLQGFGFKMADALAENLGIESDSPKRFRAALLHCLLEESINQGDTYVQAR
QLLSVTINLLEDARQVECHPAAVAQQLTSLIEEGNIKNIDTKLFDTSLYFAEEGIAKNIRRLLDQPLDSHLNSEAIQKEI
QVLQDKFGITYDQVQQEAIEKALTSKVFLLTGGPGTGKTTVIRGILQAYAKLHQLDLDKKDLPILLAAPTGRAARRMNEL
TELPSATIHRHLGLTGDNDYQTMEDYLDCDLLIVDEFSMVDTWLANQLLSAVSSTTQVIIVGDSDQLPSVGPGQVLADLL
KVKNLPQIALRKIFRQSQESTIVALADQMRRGILAPDFREKKADRSYFEAQAAFIPDMIQKIVLSAIKSGIPAEEIQILA
PMYKGQAGINHLNQLMQDLLNPLEEQTEFLFNDTRFRKRDKVLHLVNDAQLNVFNGDIGYITDLIPAKYTESKQDELVIA
FDGSEVTYPRNEWLKLTLAYAMSIHKSQGSEFQVVILPITRQSGRLLQRNLIYTAITRSKSKLIMLGELAAFDYAIHNEG
IKRQTYLVERFQEQEPEEKTQTNQTQADLEKPANHLNGQVISRSKAHSTKASLTKQQQPLCVLTPDNFLTIDPMIGITED
DICHFFQKNP

Nucleotide


Download         Length: 2433 bp        

>NTDB_id=394448 GE023_RS09025 WP_164401557.1 1828027..1830459(+) (recD/recD2/recDB) [Streptococcus canis strain HL_98_2]
ATGGAATACTTTTTCACAGGTACTGTTGACCGTATTATCTTTGAAAACCAAGCTAATTTTTTCAAAATTCTTCTCCTTAC
AATCGAGGATACTGACAGTGATGTGGATGATATAGACATCATTATCACTGGAACCATGGCTGACATTGTGGAAGGGGAAG
ATTATACCTTTTGGGGAGAATTAACCCAGCATCCTAAGTATGGTCAACAAGTCAAGCTGAGCCGTTATCAAAAAATGAAA
CCCAATTCCTCTGGTTTAGTGACTTATTTTTCTAGTGACCATTTCAAGGGGATTGGGAAAAAAACAGCTGAAAAGATTAT
TGCTCTCTATGGCAATAACACCATTGACCATATTTTAGAAGACCCCAGTAAACTGGAAAGCATTTCTAGCCTGTCCAAGG
TCAACCGCCAAGCCTTTGTAGCCAAACTCAAATTAAATTATGGTACCGAACAAATTATTGCTGGCTTAGCAGAGTTAGGC
TTAAGCAACCGTTTTGCCTTTCAAGCCTTTGACCAATACAAGGAAGAAGCCATTGAGCTGATTAAGGAAAATCCTTACCG
GCTAGTCGAAGACCTTCAAGGTTTTGGGTTTAAAATGGCTGATGCCCTAGCTGAAAACTTAGGAATTGAAAGCGACTCTC
CTAAACGTTTTCGGGCAGCTCTTTTGCATTGTCTCTTGGAAGAATCAATCAACCAAGGAGATACTTACGTTCAAGCACGC
CAATTACTATCTGTTACCATTAATCTCTTAGAAGATGCCCGTCAAGTAGAATGTCATCCAGCTGCTGTTGCCCAACAATT
AACCTCCTTGATTGAAGAGGGCAATATTAAAAATATTGATACCAAGCTTTTTGATACCAGCCTTTACTTTGCTGAGGAAG
GAATTGCCAAAAATATCAGAAGACTTTTAGACCAACCTCTGGACAGTCACCTTAACTCTGAGGCTATCCAGAAAGAAATT
CAAGTCCTTCAAGATAAATTCGGCATCACCTATGATCAGGTCCAACAAGAAGCTATTGAGAAGGCTTTGACCAGCAAAGT
ATTTCTACTAACAGGGGGACCAGGTACTGGAAAAACCACTGTTATTCGAGGAATCTTGCAAGCCTATGCCAAGCTTCACC
AGCTTGACCTTGACAAAAAAGATCTTCCTATTTTATTAGCAGCCCCAACAGGACGAGCAGCTCGGCGGATGAATGAGCTG
ACCGAACTTCCTAGTGCTACTATCCATAGACACCTCGGTTTAACTGGCGATAATGACTATCAGACCATGGAAGACTATTT
GGATTGTGATTTACTGATTGTGGATGAATTTTCCATGGTTGATACTTGGCTTGCCAATCAACTGCTATCTGCTGTCAGCT
CGACCACTCAGGTCATTATTGTGGGCGATAGTGACCAGCTGCCTTCTGTCGGCCCTGGGCAAGTGTTGGCAGATCTTTTA
AAGGTCAAAAATCTCCCACAAATTGCCCTAAGGAAAATCTTTCGCCAATCTCAAGAATCAACCATTGTAGCGTTGGCAGA
TCAGATGCGTCGTGGTATTTTAGCTCCAGATTTTAGAGAAAAAAAGGCTGATCGTTCTTATTTTGAAGCACAAGCAGCCT
TTATCCCTGACATGATTCAAAAAATTGTGCTTTCTGCTATCAAAAGCGGTATTCCTGCTGAAGAAATTCAAATTTTAGCC
CCTATGTATAAAGGACAGGCTGGCATCAATCATCTCAATCAACTAATGCAAGATCTCCTCAATCCCTTAGAAGAGCAGAC
AGAATTTCTGTTCAACGACACCCGCTTCCGTAAGAGGGATAAGGTTTTGCACTTGGTCAATGATGCTCAACTCAATGTCT
TTAATGGCGATATTGGTTATATCACTGACTTGATTCCAGCCAAATACACTGAATCCAAGCAGGACGAATTAGTTATAGCA
TTTGACGGCAGCGAAGTAACTTATCCTCGAAATGAATGGCTTAAATTAACCCTTGCCTATGCCATGAGCATTCATAAGTC
GCAAGGTAGTGAATTTCAGGTTGTTATTTTGCCAATCACCCGTCAAAGTGGACGACTGCTGCAACGCAATCTTATTTACA
CAGCTATCACACGTTCCAAAAGCAAACTCATTATGCTAGGAGAATTGGCCGCTTTTGATTATGCCATTCACAATGAGGGC
ATCAAGCGACAAACTTATTTGGTGGAACGCTTCCAAGAGCAAGAACCTGAAGAAAAAACTCAGACCAACCAAACACAAGC
TGACCTCGAAAAACCTGCAAATCACTTAAATGGTCAAGTAATCAGTCGTTCAAAAGCACATTCAACCAAGGCTAGCCTGA
CCAAGCAACAGCAGCCCCTTTGTGTCTTAACTCCTGATAATTTTCTTACCATTGATCCGATGATAGGGATTACAGAAGAC
GATATCTGCCACTTTTTTCAGAAAAATCCCTAA

Domains

Predicted by InterProScan.

Helix-hairpin-helix containing domain (HHH_RecD2)

(147-236)

UvrD-like helicase C-terminal domain (UvrD_C_2)

(659-705)

AAA domain (AAA_30)

(331-525)

ATP-dependent RecD-like DNA helicase SH3 domain (SH3_13)

(572-641)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recD/recD2/recDB Bacillus subtilis subsp. subtilis str. 168

41.524

93.951

0.39

Multiple sequence alignment