Detailed information    

insolico Bioinformatically predicted

Overview

Name   mutS/mutS2   Type   Machinery gene
Locus tag   GE023_RS09000 Genome accession   NZ_CP053789
Coordinates   1822951..1825287 (-) Length   778 a.a.
NCBI ID   WP_159304525.1    Uniprot ID   -
Organism   Streptococcus canis strain HL_98_2     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1817951..1830287
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GE023_RS11195 - 1819266..1819559 (-) 294 WP_003045183.1 hypothetical protein -
  GE023_RS08985 (GE023_008980) mutY 1819729..1820892 (+) 1164 WP_003045185.1 A/G-specific adenine glycosylase -
  GE023_RS08990 (GE023_008985) trxA 1820990..1821304 (-) 315 WP_003045187.1 thioredoxin -
  GE023_RS08995 (GE023_008990) - 1821531..1822850 (+) 1320 WP_003045190.1 FAD-containing oxidoreductase -
  GE023_RS09000 (GE023_008995) mutS/mutS2 1822951..1825287 (-) 2337 WP_159304525.1 endonuclease MutS2 Machinery gene
  GE023_RS09005 (GE023_009000) - 1825451..1825996 (-) 546 WP_003045194.1 CvpA family protein -
  GE023_RS09010 (GE023_009005) - 1825999..1826307 (-) 309 WP_003045196.1 hypothetical protein -
  GE023_RS09015 (GE023_009010) rnhC 1826454..1827362 (+) 909 WP_093999376.1 ribonuclease HIII -
  GE023_RS09020 (GE023_009015) lepB 1827373..1827966 (+) 594 WP_164401559.1 signal peptidase I -

Sequence

Protein


Download         Length: 778 a.a.        Molecular weight: 87254.94 Da        Isoelectric Point: 6.7700

>NTDB_id=394447 GE023_RS09000 WP_159304525.1 1822951..1825287(-) (mutS/mutS2) [Streptococcus canis strain HL_98_2]
MDKKILEQLDFDKVKEHFRTYLQTEQGSRELDQLEPLTNHDKIKHSFLEIEEMAAIFVEQHSFALGSLSDISVSMRRLEL
EADLNITELLAVKKLLQVSAEASRFYTELENVELRALKLLFEKLELFPNLQGGLQAINDSGFVESFASPELEKIRRSISD
KEHASRQVLQEILKKQADYLSESLIASRNGRSVLPVKNTFRNKVAGVVHDMSASGNTVYIEPRALVQLNEELTQLQAAER
YEVARVLQELSDMLRPHSRALANNAWLLGHLDFVRAKYLYLQDKKATVPTISDDKSLQLLNVRHPLLQNPVANDLHFSKD
LAVIVITGPNTGGKTIMLKTLGLAQLMAQSGLPILADNGSKVAVFNGIFADIGDEQSIEQSLSTFSSHMTHIVAILNQAD
TESLVLFDELGAGTDPQEGASLAMAILEQLRLTNIKTMATTHYPELKAYGIETPYVENASMEFDSISLKPTYRFMQGVPG
RSNAFEIARRLGLAEHIVNEAQSMTDTDSDVNRIIEQLEKQTLESRKRLDHIKEVEQDNLKFNRAVKKLYHDFSQAKDKE
IEKARLEAREIVDMALAESDSILSRLHDKAALKPHEVIEAKGQLKQLVPERDLAQNKVLKKAKQLRAPRVGDDIIVMAYG
QRGTLVKELKDKRWESQVGLIKMTLSEDEFSLVKVVEEAQKPKKKPVKVVKKATAGTGPRARLDLRGKRYEEAMQELDSF
IDQALLNNMSQVDIIHGIGTGVIREAVTKYLRRNKHVKSFGYAPQNAGGSGCTIANLG

Nucleotide


Download         Length: 2337 bp        

>NTDB_id=394447 GE023_RS09000 WP_159304525.1 1822951..1825287(-) (mutS/mutS2) [Streptococcus canis strain HL_98_2]
ATGGATAAAAAGATTTTAGAACAGTTAGACTTTGACAAGGTTAAGGAACACTTTCGGACTTACTTGCAAACAGAGCAAGG
TAGCCGTGAGTTGGACCAACTGGAGCCCTTAACCAATCATGACAAAATCAAACATTCTTTCTTAGAGATCGAGGAGATGG
CTGCTATTTTTGTAGAGCAGCATAGCTTTGCTTTAGGAAGCCTATCAGATATTTCGGTTAGCATGCGACGTCTGGAATTA
GAAGCCGATTTAAACATTACTGAATTGTTGGCGGTCAAAAAATTGCTGCAGGTATCAGCTGAAGCTAGCCGTTTTTACAC
TGAGTTAGAAAATGTTGAACTCAGGGCTCTAAAGCTTTTATTTGAGAAGTTAGAGCTCTTTCCTAACCTCCAAGGCGGCC
TTCAGGCGATTAATGATAGCGGTTTTGTGGAAAGTTTTGCTAGCCCAGAATTAGAAAAGATTCGCCGCAGTATTTCAGAT
AAAGAGCATGCCAGTCGTCAAGTGTTACAGGAGATCCTCAAAAAACAGGCTGACTATTTGTCAGAAAGTTTGATTGCTAG
TCGAAATGGACGCAGCGTCTTACCTGTCAAAAACACTTTTCGTAATAAGGTGGCTGGAGTGGTTCACGATATGTCAGCTT
CTGGTAATACAGTCTATATTGAACCAAGAGCCCTTGTGCAGCTGAATGAAGAATTGACACAGTTGCAGGCAGCTGAGCGC
TATGAGGTGGCGCGTGTCCTTCAAGAATTATCAGACATGCTTCGTCCTCACAGTCGGGCTCTTGCAAATAATGCTTGGTT
GTTGGGGCATTTGGATTTTGTTCGGGCTAAGTACCTTTATCTGCAAGACAAAAAGGCAACGGTTCCAACCATTTCAGATG
ACAAAAGTTTACAGTTGTTAAATGTGCGCCACCCTCTTTTGCAAAATCCTGTTGCCAACGATTTGCATTTTTCTAAAGAC
TTAGCTGTTATTGTCATTACAGGTCCTAATACAGGTGGGAAGACCATTATGTTGAAAACACTTGGTTTAGCACAGTTAAT
GGCACAATCTGGACTTCCTATTTTGGCTGACAACGGTTCCAAGGTGGCTGTTTTTAATGGTATTTTTGCGGACATCGGAG
ATGAGCAGTCGATTGAGCAGAGCTTGTCAACCTTCTCCAGTCACATGACGCATATTGTGGCTATTTTGAATCAGGCTGAC
ACAGAAAGTTTGGTGCTCTTTGACGAATTGGGGGCAGGCACGGATCCCCAAGAAGGGGCTAGTTTAGCTATGGCCATTCT
GGAACAATTACGTTTGACCAATATTAAAACCATGGCAACCACGCATTATCCAGAATTAAAGGCTTATGGTATTGAAACAC
CCTACGTGGAAAATGCCAGCATGGAGTTTGACAGCATCAGCTTAAAACCAACTTACCGCTTTATGCAAGGGGTACCTGGC
CGATCAAACGCTTTTGAAATTGCTAGACGACTTGGTTTAGCAGAACACATCGTCAATGAAGCTCAAAGCATGACAGATAC
TGATAGTGATGTCAACCGCATTATTGAACAGCTGGAAAAACAAACCTTGGAAAGTCGTAAGCGTCTGGACCACATCAAAG
AAGTAGAGCAAGACAACCTCAAATTCAACCGTGCGGTTAAAAAGCTGTACCATGATTTTTCACAGGCCAAAGACAAGGAA
ATTGAAAAAGCAAGGCTTGAAGCTCGGGAAATTGTTGATATGGCCTTGGCAGAAAGTGACAGTATCCTAAGCCGATTGCA
TGATAAGGCTGCGCTCAAACCTCATGAAGTTATTGAAGCCAAGGGACAACTCAAACAACTCGTCCCAGAAAGAGATTTAG
CGCAAAACAAGGTTTTGAAAAAAGCCAAACAATTACGAGCTCCTCGTGTAGGAGATGACATTATTGTAATGGCATACGGG
CAACGCGGAACCTTGGTTAAAGAACTCAAGGACAAGAGATGGGAATCCCAAGTCGGTCTCATTAAAATGACTCTCAGTGA
AGACGAATTCAGCCTTGTTAAGGTTGTTGAAGAAGCACAAAAGCCTAAGAAAAAGCCAGTCAAGGTGGTAAAAAAAGCGA
CTGCCGGCACTGGACCACGTGCTCGTCTGGATTTGCGTGGGAAACGTTATGAGGAGGCTATGCAAGAACTTGACAGCTTT
ATCGATCAAGCACTATTAAACAATATGAGCCAAGTAGATATTATTCACGGTATTGGGACTGGTGTGATTCGTGAAGCCGT
TACCAAATACCTCAGACGAAACAAGCATGTCAAAAGCTTTGGCTATGCTCCACAAAATGCAGGTGGATCAGGGTGTACTA
TTGCCAATTTAGGTTAA

Domains

Predicted by InterProScan.

MutS2 and Smr-associated SH3 domain (MSSS)

(630-669)

Smr domain (Smr)

(703-776)

MutS domain V (MutS_V)

(324-505)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  mutS/mutS2 Bacillus subtilis subsp. subtilis str. 168

39.849

100

0.406

Multiple sequence alignment