Detailed information    

insolico Bioinformatically predicted

Overview

Name   codY   Type   Regulator
Locus tag   GE023_RS08790 Genome accession   NZ_CP053789
Coordinates   1768090..1768872 (-) Length   260 a.a.
NCBI ID   WP_003045096.1    Uniprot ID   -
Organism   Streptococcus canis strain HL_98_2     
Function   repress the expression of comX (predicted from homology)   
Competence regulation

Genomic Context

Location: 1763090..1773872
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GE023_RS08770 (GE023_008765) - 1764881..1765720 (-) 840 WP_003045083.1 pyruvate, water dikinase regulatory protein -
  GE023_RS08775 (GE023_008770) - 1765741..1766334 (-) 594 WP_307761768.1 CBS domain-containing protein -
  GE023_RS08780 (GE023_008775) - 1766798..1767109 (-) 312 WP_003045089.1 rhodanese-like domain-containing protein -
  GE023_RS08785 (GE023_008780) - 1767412..1767963 (-) 552 WP_003045093.1 cysteine hydrolase family protein -
  GE023_RS08790 (GE023_008785) codY 1768090..1768872 (-) 783 WP_003045096.1 GTP-sensing pleiotropic transcriptional regulator CodY Regulator
  GE023_RS08795 (GE023_008790) - 1769126..1770340 (-) 1215 WP_093998814.1 pyridoxal phosphate-dependent aminotransferase -
  GE023_RS08800 (GE023_008795) - 1770669..1771121 (+) 453 WP_003045102.1 universal stress protein -
  GE023_RS08805 (GE023_008800) - 1771456..1772844 (-) 1389 WP_164406230.1 Cof-type HAD-IIB family hydrolase -

Sequence

Protein


Download         Length: 260 a.a.        Molecular weight: 28773.86 Da        Isoelectric Point: 4.4047

>NTDB_id=394442 GE023_RS08790 WP_003045096.1 1768090..1768872(-) (codY) [Streptococcus canis strain HL_98_2]
MPNLLEKTRQITSILQRSVDSLETELPYNAMASRLADIIDCNACIINGGGTLLGYAMKYRTNTDRVEEFFEAKQFPDTYV
KAASRVYDTEANLSVENELTIFPVESKDIYPDGLTTIAPIYGGGMRLGSLIIWRNDNEFSDDDLILVEISSTVVGIQLLN
LQTENLEETIRKQTAINMAINTLSYSEMKAVAAILGELDGNEGRLTASVIADRIGITRSVIVNALRKLESAGIIESRSLG
MKGTYLKVINEGIFDKLKEF

Nucleotide


Download         Length: 783 bp        

>NTDB_id=394442 GE023_RS08790 WP_003045096.1 1768090..1768872(-) (codY) [Streptococcus canis strain HL_98_2]
ATGCCTAACTTATTAGAAAAAACTCGTCAAATTACGTCTATTCTGCAGCGTTCCGTAGATAGCTTGGAGACAGAACTCCC
ATACAATGCCATGGCATCTCGCTTAGCAGATATTATTGACTGTAATGCTTGTATTATTAACGGTGGCGGAACCCTACTTG
GTTATGCCATGAAATATAGAACCAACACTGACCGTGTGGAAGAATTTTTTGAAGCAAAACAATTTCCAGATACTTATGTA
AAGGCGGCTAGTCGAGTTTACGACACGGAAGCCAATCTTTCAGTTGAAAATGAATTAACCATTTTCCCAGTAGAATCTAA
GGACATTTACCCTGATGGCTTGACCACCATTGCCCCAATTTACGGTGGTGGGATGCGTCTTGGTTCTCTGATTATCTGGC
GAAATGACAATGAGTTTAGCGATGATGATTTGATTTTGGTGGAAATTTCAAGCACTGTTGTAGGGATTCAATTATTGAAC
CTTCAAACAGAAAACTTGGAAGAGACCATCCGTAAACAAACGGCTATCAATATGGCTATTAATACCTTATCTTATTCCGA
AATGAAAGCTGTCGCAGCTATTCTGGGAGAATTAGATGGTAACGAAGGTCGCTTAACCGCTTCTGTTATTGCTGACCGTA
TTGGCATTACCCGTTCTGTTATCGTCAATGCCCTTCGTAAATTAGAAAGTGCTGGGATTATTGAGAGCCGTTCGCTTGGA
ATGAAGGGAACCTATCTCAAAGTTATCAACGAAGGTATTTTTGATAAATTAAAAGAATTTTAA

Domains

Predicted by InterProScan.

CodY GAF-like domain (CodY)

(3-182)

CodY helix-turn-helix domain (HTH_CodY)

(202-260)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  codY Lactococcus lactis subsp. lactis strain DGCC12653

66.537

98.846

0.658
  codY Bacillus subtilis subsp. subtilis str. 168

52.632

95

0.5