Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilN   Type   Machinery gene
Locus tag   HJ571_RS29395 Genome accession   NZ_CP053747
Coordinates   6294323..6294919 (-) Length   198 a.a.
NCBI ID   WP_003095839.1    Uniprot ID   G3XD30
Organism   Pseudomonas aeruginosa strain Pae1255-NDM1     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 6289323..6299919
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HJ571_RS29375 (HJ571_29375) aroK 6290454..6290972 (-) 519 WP_003095833.1 shikimate kinase AroK -
  HJ571_RS29380 (HJ571_29380) pilQ 6290984..6293128 (-) 2145 WP_179839589.1 type 4a pilus secretin PilQ Machinery gene
  HJ571_RS29385 (HJ571_29385) comL/pilP 6293182..6293706 (-) 525 WP_003095836.1 type 4a pilus biogenesis lipoprotein PilP Machinery gene
  HJ571_RS29390 (HJ571_29390) pilO 6293703..6294326 (-) 624 WP_003103268.1 type 4a pilus biogenesis protein PilO Machinery gene
  HJ571_RS29395 (HJ571_29395) pilN 6294323..6294919 (-) 597 WP_003095839.1 type 4a pilus biogenesis protein PilN Machinery gene
  HJ571_RS29400 (HJ571_29400) pilM 6294919..6295983 (-) 1065 WP_003110888.1 type IV pilus assembly protein PilM Machinery gene
  HJ571_RS29405 (HJ571_29405) - 6296168..6298636 (+) 2469 WP_003114576.1 penicillin-binding protein 1A -

Sequence

Protein


Download         Length: 198 a.a.        Molecular weight: 22213.55 Da        Isoelectric Point: 10.0895

>NTDB_id=394183 HJ571_RS29395 WP_003095839.1 6294323..6294919(-) (pilN) [Pseudomonas aeruginosa strain Pae1255-NDM1]
MARINLLPWREELREQRKQQFLVILGGVLVASAALVFLGDQYFTAAIENQNARNDFLRKEIVVLDARIKEISELKSRRQQ
LLERMKIIQDLQGNRPIIGRVFDQLVRTLPDGVYFTDLKMTGKNIAIAGAAESNNRVSNLMRNMDASEWLTAPTLNEVKA
VTQGAVDQANVFQLTVQQTQPGEEDAKAKHGVAQGAKK

Nucleotide


Download         Length: 597 bp        

>NTDB_id=394183 HJ571_RS29395 WP_003095839.1 6294323..6294919(-) (pilN) [Pseudomonas aeruginosa strain Pae1255-NDM1]
ATGGCACGGATCAACCTTCTACCCTGGCGCGAAGAGCTGCGCGAGCAGCGCAAGCAGCAGTTCCTGGTGATTCTTGGCGG
CGTCCTGGTGGCATCGGCTGCGCTGGTATTCCTTGGCGACCAGTACTTCACCGCGGCCATCGAGAACCAGAACGCCCGCA
ACGACTTCCTGCGCAAGGAAATCGTCGTACTCGACGCCCGGATCAAGGAAATCAGCGAACTGAAGTCGCGTCGCCAGCAA
TTGCTCGAGCGGATGAAGATCATCCAGGACCTGCAGGGCAACCGTCCCATCATCGGACGGGTGTTCGACCAGCTCGTGCG
GACCTTGCCCGACGGCGTGTATTTCACCGACCTGAAGATGACCGGCAAGAACATTGCCATCGCCGGCGCGGCCGAGTCCA
ACAACCGCGTTTCCAATCTCATGCGCAACATGGACGCGTCCGAGTGGTTGACCGCCCCGACCCTGAACGAGGTCAAGGCG
GTGACCCAGGGCGCGGTGGACCAGGCCAACGTGTTCCAACTGACCGTGCAGCAGACGCAGCCCGGCGAGGAAGACGCCAA
GGCGAAGCATGGGGTTGCGCAAGGAGCCAAGAAATGA

Domains

Predicted by InterProScan.

Fimbrial assembly protein (PilN) (PilN)

(100-177)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  PDB 5EOU

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilN Legionella pneumophila strain ERS1305867

41.714

88.384

0.369