Detailed information    

insolico Bioinformatically predicted

Overview

Name   codY   Type   Regulator
Locus tag   GCU76_RS08835 Genome accession   NZ_CP045425
Coordinates   1679327..1680106 (+) Length   259 a.a.
NCBI ID   WP_003220850.1    Uniprot ID   G4NSM6
Organism   Bacillus subtilis strain JAAA     
Function   repression of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 1674327..1685106
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GCU76_RS08815 trmFO 1675020..1676327 (+) 1308 WP_017694866.1 FADH(2)-oxidizing methylenetetrahydrofolate--tRNA-(uracil(54)-C(5))- methyltransferase TrmFO -
  GCU76_RS08820 xerC 1676395..1677309 (+) 915 WP_003231988.1 tyrosine recombinase XerC -
  GCU76_RS08825 clpQ 1677322..1677867 (+) 546 WP_003238555.1 ATP-dependent protease subunit ClpQ -
  GCU76_RS08830 hslU 1677884..1679287 (+) 1404 WP_152425440.1 HslU--HslV peptidase ATPase subunit -
  GCU76_RS08835 codY 1679327..1680106 (+) 780 WP_003220850.1 GTP-sensing pleiotropic transcriptional regulator CodY Regulator
  GCU76_RS08840 flgB 1680486..1680875 (+) 390 WP_003245656.1 flagellar basal body rod protein FlgB -
  GCU76_RS08845 flgC 1680875..1681327 (+) 453 WP_017694868.1 flagellar basal body rod protein FlgC -
  GCU76_RS08850 fliE 1681338..1681658 (+) 321 WP_003238544.1 flagellar hook-basal body complex protein FliE -
  GCU76_RS08855 fliF 1681704..1683314 (+) 1611 WP_080317085.1 flagellar basal-body MS-ring/collar protein FliF -
  GCU76_RS08860 fliG 1683327..1684343 (+) 1017 WP_003231981.1 flagellar motor switch protein FliG -
  GCU76_RS08865 fliH 1684336..1685088 (+) 753 WP_026113606.1 flagellar assembly protein FliH -

Sequence

Protein


Download         Length: 259 a.a.        Molecular weight: 29013.22 Da        Isoelectric Point: 4.6514

>NTDB_id=393982 GCU76_RS08835 WP_003220850.1 1679327..1680106(+) (codY) [Bacillus subtilis strain JAAA]
MALLQKTRIINSMLQAAAGKPVNFKEMAETLRDVIDSNIFVVSRRGKLLGYSINQQIENDRMKKMLEDRQFPEEYTKNLF
NVPETSSNLDINSEYTAFPVENRDLFQAGLTTIVPIIGGGERLGTLILSRLQDQFNDDDLILAEYGATVVGMEILREKAE
EIEEEARSKAVVQMAISSLSYSELEAIEHIFEELDGNEGLLVASKIADRVGITRSVIVNALRKLESAGVIESRSLGMKGT
YIKVLNNKFLIELENLKSH

Nucleotide


Download         Length: 780 bp        

>NTDB_id=393982 GCU76_RS08835 WP_003220850.1 1679327..1680106(+) (codY) [Bacillus subtilis strain JAAA]
ATGGCTTTATTACAAAAAACAAGAATTATTAACTCCATGCTGCAAGCTGCGGCAGGGAAACCGGTAAACTTCAAGGAAAT
GGCGGAGACGCTGCGGGATGTAATTGATTCCAATATTTTCGTTGTAAGCCGCAGAGGGAAACTCCTTGGGTATTCTATTA
ACCAGCAAATTGAAAATGATCGTATGAAAAAAATGCTTGAGGATCGTCAATTCCCTGAAGAATATACGAAGAATCTGTTT
AATGTCCCTGAAACATCTTCTAACTTGGATATTAATAGTGAATATACTGCTTTCCCTGTTGAGAACAGAGACCTGTTTCA
AGCTGGTTTAACAACAATTGTGCCGATCATCGGAGGCGGGGAAAGATTAGGAACACTTATTCTTTCACGTTTACAAGATC
AATTCAATGACGATGACTTAATTCTAGCTGAATACGGCGCAACAGTTGTCGGAATGGAAATCCTAAGAGAAAAAGCAGAA
GAAATTGAAGAGGAAGCAAGAAGCAAAGCTGTCGTACAAATGGCTATCAGCTCGCTTTCTTACAGTGAGCTTGAAGCAAT
TGAGCACATTTTTGAGGAGCTTGACGGAAACGAAGGTCTTCTTGTTGCAAGTAAAATTGCTGACCGTGTCGGCATTACCC
GTTCTGTTATTGTGAACGCACTCAGAAAGCTGGAGAGCGCCGGTGTTATCGAGTCTAGATCATTAGGAATGAAAGGTACT
TATATCAAGGTACTAAACAACAAATTCTTAATTGAATTAGAAAATCTAAAATCTCATTAA

Domains

Predicted by InterproScan.

CodY helix-turn-helix domain (HTH_CodY)

(198-255)

CodY GAF-like domain (CodY)

(3-178)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB G4NSM6

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  codY Bacillus subtilis subsp. subtilis str. 168

100

100

1
  codY Lactococcus lactis subsp. lactis strain DGCC12653

47.451

98.456

0.467

Multiple sequence alignment