Detailed information    

insolico Bioinformatically predicted

Overview

Name   recJ   Type   Machinery gene
Locus tag   FIU87_RS14765 Genome accession   NZ_CP045403
Coordinates   2817705..2820050 (-) Length   781 a.a.
NCBI ID   WP_152446590.1    Uniprot ID   A0A5P9HRF8
Organism   Bacillus sp. THAF10     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2812705..2825050
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FIU87_RS14750 (FIU87_15165) dtd 2814019..2814459 (-) 441 WP_152445296.1 D-aminoacyl-tRNA deacylase -
  FIU87_RS14755 (FIU87_15170) - 2814476..2816674 (-) 2199 WP_152445297.1 bifunctional (p)ppGpp synthetase/guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase -
  FIU87_RS14760 (FIU87_15180) - 2817178..2817690 (-) 513 WP_152445298.1 adenine phosphoribosyltransferase -
  FIU87_RS14765 (FIU87_15185) recJ 2817705..2820050 (-) 2346 WP_152446590.1 single-stranded-DNA-specific exonuclease RecJ Machinery gene
  FIU87_RS14770 (FIU87_15190) - 2820317..2820853 (+) 537 WP_152445299.1 GNAT family N-acetyltransferase -
  FIU87_RS21585 (FIU87_15195) - 2820932..2821141 (+) 210 WP_301538674.1 NUDIX hydrolase -
  FIU87_RS14780 (FIU87_15200) - 2821298..2822395 (-) 1098 WP_152445300.1 endospore germination permease -
  FIU87_RS14785 (FIU87_15205) - 2822416..2823609 (-) 1194 WP_152445301.1 Ger(x)C family spore germination protein -

Sequence

Protein


Download         Length: 781 a.a.        Molecular weight: 87883.68 Da        Isoelectric Point: 5.3204

>NTDB_id=393811 FIU87_RS14765 WP_152446590.1 2817705..2820050(-) (recJ) [Bacillus sp. THAF10]
MLASKSRWNIKKPNEELIQQLAQTLNIAPLISSLLVNRGMDSAEKAKEFLYTEQLDFHDPFLLNEMDVVVKRVQEAIENE
EKILVFGDYDADGVSSTTVMVTALKEIGANVDFYIPNRFTEGYGPNETAFKEAKENGFSVIITVDTGISALHEANVAKEL
GIDLIITDHHEPGPKLPDAFAIIHPKKKTCTYPFKDLAGVGVAYKVAHALLGKNPEHLLEVAAIGTIADLVPLVGENRLL
ASKGIKKMQQTTRVGLKALLQKCGVEPHTITEETIGFSIGPRINAVGRLDNADPAVHLLMTQDVEEAKMLSEEMESYNKE
RQQIVNTITEEAIKQVEEKYPPEKNSFIIVEGQNWNAGVIGIVASRLVDRFYRPTIVLSLDEESGLAKGSARSIAGFDLF
ENLSLCRDILPHFGGHPMAAGMTLKMEHVDELRQRMNQRANELLTAEDFMPLTEVDIACSLEEVSLKTIEQLDLLAPFGV
ANPKPKVLLTEVTPQQIRQIGNKSNHLKLVLEQDGSSLDCVGFGFGETYHHISPGATLDVIGELSINEWNNFKKPQLFLG
DMRIKESQLFDLRSIKQLNQTLASIPVDKLQILYFNESTLYDLKLQEELLPFAKLVTSDTKHDLNGQYVVILDIPSEESL
LSSVLKEAEPARIYAAFYQQDTHFFSTIPTRDDFKWFYALLVKKGNIDLKKHALDIAKHRGWSKETVDFISKVFFELEFV
TIDNGFITLNHAAKKRDFEESPTYRKKQQQLQLENLFLYSSYKQLKAWFDQHLTKQCIVHS

Nucleotide


Download         Length: 2346 bp        

>NTDB_id=393811 FIU87_RS14765 WP_152446590.1 2817705..2820050(-) (recJ) [Bacillus sp. THAF10]
TTGTTAGCTTCAAAATCACGTTGGAATATAAAAAAACCGAATGAAGAACTCATTCAACAATTAGCCCAAACGCTTAATAT
CGCCCCTCTTATCTCTTCCCTATTAGTTAACAGAGGGATGGATTCAGCTGAGAAAGCAAAGGAATTTTTATATACAGAGC
AATTAGATTTTCATGATCCATTCTTACTAAATGAGATGGATGTAGTGGTAAAACGTGTGCAAGAGGCCATTGAAAATGAG
GAGAAAATCCTTGTTTTTGGGGATTACGATGCCGATGGAGTAAGTAGCACAACGGTCATGGTAACTGCGCTCAAAGAAAT
AGGAGCGAATGTGGATTTTTATATTCCTAATCGTTTTACCGAGGGCTATGGTCCTAATGAAACTGCCTTCAAAGAGGCAA
AGGAAAATGGTTTTTCGGTCATTATTACGGTGGATACAGGAATTTCGGCTTTGCATGAAGCAAATGTAGCAAAAGAGTTG
GGCATCGATCTCATAATTACAGATCATCATGAACCAGGTCCTAAGCTACCAGATGCATTTGCCATCATTCATCCTAAAAA
AAAGACTTGTACATACCCCTTTAAAGACTTGGCTGGAGTGGGAGTTGCCTATAAGGTTGCGCATGCGCTCCTTGGGAAAA
ATCCGGAACATCTCTTGGAAGTTGCGGCAATAGGGACGATTGCGGACCTTGTACCATTGGTGGGAGAGAATCGTCTCCTT
GCCTCTAAAGGAATTAAAAAGATGCAACAAACCACAAGGGTAGGATTAAAGGCATTACTGCAAAAATGTGGCGTCGAGCC
TCATACCATTACCGAGGAGACGATAGGTTTTTCTATTGGACCACGAATCAATGCTGTTGGACGTCTAGATAATGCTGATC
CAGCCGTCCATCTATTAATGACCCAGGATGTTGAGGAAGCAAAGATGCTTTCTGAGGAAATGGAGTCCTACAATAAAGAA
AGACAGCAAATCGTCAATACCATTACAGAAGAAGCCATCAAGCAAGTGGAAGAGAAATATCCTCCTGAAAAAAATAGCTT
TATTATTGTCGAGGGACAAAATTGGAATGCTGGAGTAATCGGAATTGTTGCATCACGTCTAGTTGACCGTTTTTACCGAC
CAACCATCGTTTTAAGTCTGGATGAGGAAAGCGGCTTGGCGAAAGGGTCCGCTCGTTCCATAGCTGGTTTTGATTTGTTT
GAAAATCTATCTCTTTGTCGTGATATCCTCCCACACTTTGGAGGTCATCCCATGGCCGCAGGAATGACGTTGAAAATGGA
GCATGTGGATGAACTAAGACAGAGAATGAACCAAAGAGCGAATGAGCTATTAACAGCAGAGGATTTTATGCCGCTTACGG
AAGTGGATATCGCATGCAGTTTAGAAGAAGTGTCACTTAAAACCATTGAACAGCTTGATTTGCTAGCACCATTTGGCGTC
GCTAATCCTAAACCTAAAGTATTGCTAACAGAAGTAACTCCACAACAAATTCGTCAGATTGGCAATAAAAGCAATCATTT
GAAACTGGTATTAGAACAAGATGGGTCTTCTTTGGACTGTGTTGGATTTGGGTTTGGAGAAACCTATCATCATATTTCAC
CTGGTGCGACTCTCGATGTGATCGGGGAGCTTTCGATTAACGAATGGAACAATTTCAAGAAGCCTCAATTGTTCTTAGGA
GATATGAGAATAAAAGAGAGCCAGCTTTTTGATTTAAGGTCGATAAAGCAGTTAAATCAGACGTTAGCCAGTATTCCAGT
GGACAAGCTTCAGATACTTTATTTTAATGAAAGCACGCTTTATGATTTGAAGTTGCAAGAGGAACTGCTTCCTTTTGCAA
AACTAGTAACTAGCGATACAAAGCATGACCTTAACGGACAATATGTTGTCATTTTAGACATTCCATCTGAAGAATCGCTG
CTTTCCTCTGTTCTTAAAGAAGCAGAGCCTGCTAGAATTTATGCAGCTTTTTACCAGCAGGACACGCATTTCTTTTCTAC
CATTCCAACAAGAGATGACTTTAAATGGTTTTACGCCTTGCTTGTAAAAAAGGGCAATATTGATTTGAAAAAACATGCCC
TAGATATCGCCAAGCATCGTGGCTGGTCAAAAGAAACAGTAGATTTCATCTCGAAGGTGTTTTTTGAGCTAGAATTTGTT
ACAATAGACAATGGTTTTATCACATTAAATCATGCTGCGAAAAAGCGGGACTTCGAAGAATCTCCTACTTATCGTAAAAA
ACAACAACAGCTTCAGCTAGAGAACTTGTTTTTGTATTCATCATATAAACAGTTAAAAGCGTGGTTTGATCAGCACTTAA
CCAAGCAATGCATTGTTCATTCTTAG

Domains

Predicted by InterproScan.

Single-strand DNA-specific exonuclease, C terminal domain (ssDNA-exonuc_C)

(568-769)

DHH family (DHH)

(82-226)

DHHA1 domain (DHHA1)

(315-438)

RecJ OB domain (RecJ_OB)

(455-559)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A5P9HRF8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recJ Bacillus subtilis subsp. subtilis str. 168

52.76

99.744

0.526

Multiple sequence alignment