Detailed information    

insolico Bioinformatically predicted

Overview

Name   recJ   Type   Machinery gene
Locus tag   GYMC52_RS13115 Genome accession   NC_014915
Coordinates   2666162..2668528 (-) Length   788 a.a.
NCBI ID   WP_013524215.1    Uniprot ID   A0A0E0TE97
Organism   Geobacillus sp. Y412MC52     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2661162..2673528
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GYMC52_RS13090 (GYMC52_2611) ahpC 2661760..2662323 (-) 564 WP_011232052.1 alkyl hydroperoxide reductase subunit C -
  GYMC52_RS19795 (GYMC52_2612) - 2662576..2662749 (-) 174 WP_013524213.1 hypothetical protein -
  GYMC52_RS13100 (GYMC52_2613) dtd 2662830..2663288 (-) 459 WP_013524214.1 D-aminoacyl-tRNA deacylase -
  GYMC52_RS13105 (GYMC52_2614) - 2663312..2665510 (-) 2199 WP_013144642.1 RelA/SpoT family protein -
  GYMC52_RS13110 (GYMC52_2615) - 2665659..2666171 (-) 513 WP_013144641.1 adenine phosphoribosyltransferase -
  GYMC52_RS13115 (GYMC52_2616) recJ 2666162..2668528 (-) 2367 WP_013524215.1 single-stranded-DNA-specific exonuclease RecJ Machinery gene
  GYMC52_RS13120 (GYMC52_2617) - 2668586..2669494 (-) 909 WP_083777767.1 cation diffusion facilitator family transporter -
  GYMC52_RS13125 (GYMC52_2618) secDF 2669631..2671883 (-) 2253 WP_013524217.1 protein translocase subunit SecDF -
  GYMC52_RS13130 (GYMC52_2619) - 2671997..2672284 (-) 288 WP_013524218.1 post-transcriptional regulator -

Sequence

Protein


Download         Length: 788 a.a.        Molecular weight: 86879.27 Da        Isoelectric Point: 5.8265

>NTDB_id=39381 GYMC52_RS13115 WP_013524215.1 2666162..2668528(-) (recJ) [Geobacillus sp. Y412MC52]
MLKAKTRWEVERLDEQAVRRLAEEAGVTPLLARLLVRRGVRTASEAVAFLNPLEQPFHDPFLLDGMERAIQRLKRAIDAG
ERVLVYGDYDADGVCSTSVMVSALKEAGASVEFYIPNRFTEGYGPNMAAFRSAKERGVSVIVTVDNGIAAVKEIAAANEW
GMDVIVTDHHEPGPVLPEAHAIIHPKQPGSTYPFRDLAGVGVAFKVAHALLGRVPRHLLDLVAIGTIADLVPLVGENRLF
VAHGLEALRATERIGLRALFRQCRIDAAAINEQTVGFVIAPRLNAAGRLGGADPAVALLMTDDENEAVQLAAEMDELNRE
RQQLVAQIAEEAADMVRRQFPPEEHRVLVVAGEGWNAGVVGIVASKLVEQFYRPAVVLSIDREKGIAKGSARSIHGFDLF
ASLSQCRDLLPHFGGHPMAAGMTLALDDVEELRQRLNAIAAETLSEDDFTPPTFIDASCSIAELTLSAARGLERFAPFGV
GNPRPLVLIEGASVETMRRVGANGAHMKAVFSQDGAAIDAIGFGLGPLCEEIAPDARISAVGELSVNEWNGFAKPQLSLC
DLAVSDCQLFDVRGCRDVRPLLERLPKEKRLVVSFRCETGQRPDVAPFRGELHCVPTEEEAGALSIDDRYVVLLDVPPRL
ALLSALLRNGRPARIYAVFAQPEAQFFRTFPTREHFKWFYAFLHQNRSFSLAKRGGELARVRGWTEETIHFMAKVFLELD
FISEQNGVISLVHQPAKRDLHESSTYRRRRDELEAEHQLVYSTYEQLKRCLAEMTRSQTHEEANVSWT

Nucleotide


Download         Length: 2367 bp        

>NTDB_id=39381 GYMC52_RS13115 WP_013524215.1 2666162..2668528(-) (recJ) [Geobacillus sp. Y412MC52]
ATGTTGAAAGCGAAAACGCGTTGGGAGGTGGAGCGCCTCGATGAGCAGGCGGTGAGGCGGCTGGCTGAGGAAGCCGGCGT
CACGCCCTTATTGGCGAGGCTTCTCGTCCGCCGCGGGGTGCGGACGGCCTCGGAGGCGGTGGCGTTTCTTAATCCGCTTG
AGCAACCGTTTCATGATCCGTTTTTGCTTGACGGGATGGAGCGAGCGATTCAGCGTCTAAAGCGGGCGATCGACGCGGGT
GAACGCGTGTTGGTATACGGCGATTACGATGCCGATGGCGTTTGCAGCACGTCGGTGATGGTGAGTGCTCTCAAGGAGGC
GGGGGCGTCGGTCGAGTTCTACATTCCGAACCGATTTACGGAAGGATACGGGCCGAACATGGCGGCGTTTCGCTCCGCAA
AAGAGCGCGGCGTTTCCGTCATTGTGACCGTCGACAATGGGATTGCGGCGGTCAAGGAAATTGCGGCCGCCAACGAGTGG
GGGATGGATGTCATCGTAACGGATCACCATGAGCCAGGTCCGGTGTTGCCGGAGGCGCATGCGATCATTCATCCGAAGCA
GCCGGGAAGTACATATCCGTTTCGCGATTTAGCCGGCGTCGGCGTTGCGTTTAAGGTAGCCCATGCCTTGCTTGGGCGGG
TGCCGCGCCATTTGCTTGATTTGGTCGCGATCGGCACGATCGCTGATTTGGTTCCGCTTGTTGGGGAAAACCGCCTCTTT
GTTGCACACGGGCTTGAAGCGTTGCGAGCGACGGAGCGCATCGGGCTGCGCGCTCTTTTTCGGCAATGCCGCATTGATGC
GGCGGCCATCAACGAACAGACGGTCGGATTTGTCATCGCTCCGCGCTTGAACGCGGCGGGGCGCCTCGGCGGCGCTGATC
CGGCAGTGGCGCTCTTAATGACGGACGATGAGAACGAAGCGGTGCAGCTGGCGGCGGAGATGGACGAGTTAAACCGCGAA
CGTCAGCAGCTTGTGGCACAAATCGCTGAAGAAGCGGCGGACATGGTGCGCCGCCAATTTCCTCCTGAGGAACATCGCGT
CTTGGTTGTGGCAGGCGAAGGATGGAATGCCGGAGTGGTGGGCATTGTCGCTTCTAAGCTTGTTGAGCAGTTTTACCGCC
CGGCGGTCGTGCTTTCAATCGACCGGGAAAAAGGGATCGCCAAAGGGTCAGCCCGCAGCATTCATGGGTTTGACTTATTC
GCCAGCCTGTCGCAATGCCGCGACCTGTTGCCGCACTTTGGCGGCCACCCGATGGCGGCGGGGATGACATTGGCGCTTGA
TGATGTCGAAGAATTGCGGCAACGGCTGAACGCCATCGCCGCCGAAACGTTGTCTGAGGACGATTTTACGCCGCCGACGT
TCATCGATGCTTCCTGTTCGATTGCTGAGTTGACGCTGTCGGCCGCCCGCGGCCTTGAGCGGTTCGCTCCGTTTGGCGTC
GGCAATCCGCGGCCGCTTGTTCTCATTGAAGGGGCGTCGGTTGAAACCATGCGGCGCGTCGGGGCGAACGGAGCCCATAT
GAAAGCCGTCTTTTCCCAAGACGGGGCCGCGATCGATGCCATCGGCTTCGGCCTCGGACCGTTATGCGAAGAAATCGCTC
CGGATGCGCGCATTTCGGCGGTCGGGGAGCTGTCGGTGAACGAATGGAACGGGTTCGCCAAGCCGCAGCTGTCGTTGTGT
GATCTGGCGGTCAGCGACTGCCAGTTGTTTGACGTCCGCGGCTGCCGCGACGTCCGTCCACTTCTTGAGCGGCTGCCAAA
AGAGAAGCGGCTAGTCGTCTCCTTTCGCTGCGAAACTGGGCAGCGCCCGGACGTGGCGCCATTTCGCGGGGAGCTTCATT
GCGTGCCGACCGAAGAAGAGGCGGGCGCCTTATCGATTGACGACCGCTATGTCGTGCTGCTTGACGTGCCGCCGCGGCTG
GCTTTGCTGTCGGCGCTTCTTCGCAACGGACGGCCGGCGCGCATTTACGCGGTGTTCGCCCAGCCCGAGGCGCAATTTTT
CCGCACGTTTCCGACGCGCGAACATTTTAAATGGTTTTACGCCTTTTTGCATCAAAACCGTTCGTTTTCGCTCGCCAAGC
GCGGCGGTGAGCTGGCCCGCGTCCGCGGCTGGACGGAAGAGACCATTCATTTCATGGCGAAGGTGTTTTTAGAGCTTGAC
TTTATCAGCGAACAAAACGGCGTCATTTCACTCGTTCATCAGCCGGCGAAGCGCGATTTGCACGAATCGTCGACGTACCG
CCGGCGGCGGGACGAACTCGAGGCGGAGCATCAGTTAGTCTATTCCACTTACGAGCAATTGAAACGCTGTTTGGCGGAAA
TGACACGTTCGCAAACGCACGAGGAGGCAAACGTATCATGGACTTAA

Domains

Predicted by InterproScan.

RecJ OB domain (RecJ_OB)

(455-560)

DHHA1 domain (DHHA1)

(315-439)

DHH family (DHH)

(82-226)

Single-strand DNA-specific exonuclease, C terminal domain (ssDNA-exonuc_C)

(568-771)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0E0TE97

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recJ Bacillus subtilis subsp. subtilis str. 168

53.017

98.858

0.524

Multiple sequence alignment