Detailed information NTG0039380

Bioinformatically predicted

Overview

• Name: recD2
• Type: Machinery gene
• Locus tag: GYMC52_RS13015
• Genome accession: NC_014915
• Coordinates: 2642763..2645123 (-)
• Length: 786 a.a.
• NCBI ID: WP_013524203.1
• Uniprot ID: A0A0E0TEC6
• Organism: Geobacillus sp. Y412MC52
• Function: homologous recombination (predicted from homology) Homologous recombination

Genomic Context

Location: 2637763..2650123

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
GYMC52_RS12995 (GYMC52_2590)	alaS	2637774..2640410 (-)	2637	WP_013524201.1	alanine--tRNA ligase	-
GYMC52_RS13000 (GYMC52_2592)	-	2640729..2641790 (-)	1062	WP_013524202.1	AI-2E family transporter	-
GYMC52_RS18865 (GYMC52_2593)	-	2641911..2642045 (-)	135	WP_013144658.1	YrzQ family protein	-
GYMC52_RS13005 (GYMC52_2594)	-	2642057..2642248 (-)	192	WP_008881018.1	hypothetical protein	-
GYMC52_RS13010 (GYMC52_2595)	-	2642264..2642737 (-)	474	WP_011232037.1	PRC-barrel domain-containing protein	-
GYMC52_RS13015 (GYMC52_2596)	recD2	2642763..2645123 (-)	2361	WP_013524203.1	ATP-dependent RecD-like DNA helicase	Machinery gene
GYMC52_RS13020 (GYMC52_2597)	-	2645143..2645805 (-)	663	WP_011232039.1	tetratricopeptide repeat protein	-
GYMC52_RS13025 (GYMC52_2598)	mnmA	2645894..2647009 (-)	1116	WP_013524204.1	tRNA 2-thiouridine(34) synthase MnmA	-
GYMC52_RS13030 (GYMC52_2599)	-	2647025..2648167 (-)	1143	WP_013524205.1	cysteine desulfurase family protein	-
GYMC52_RS13035 (GYMC52_2600)	cymR	2648195..2648611 (-)	417	WP_011232042.1	cysteine metabolism transcriptional regulator CymR	-
GYMC52_RS13040 (GYMC52_2601)	-	2648623..2648856 (-)	234	WP_041468257.1	hypothetical protein	-

Sequence

Protein

• Length: 786 a.a.
• Molecular weight: 86563.29 Da
• Isoelectric Point: 5.1472

>NTDB_id=39380 GYMC52_RS13015 WP_013524203.1 2642763..2645123(-) (recD2) [Geobacillus sp. Y412MC52]
MQEQQILALDGRTFIKGVCLAVIFHNEETLYTVVRVRVEETNEAPVEEEVVVTGYFPRLNEGDVYIFYGQFRQHPRFGRQ
YAASQFRKQLPNTKEGVIHYLSSGLFKGIGKKTAAAIVETLGENAIAAILRDPKALERVPKLTKKKAKQLYDALRAHEGL
EQTMIALAQLGFGPQLAMKIYQAYGEEAIDIIHENPYQLVEDIEGIGFGRADEIGRQLGISGSHPARLRAASLFVLEQAC
LQEGHVYLREEELMERIGELLDGRLSGAVDGRAISQTLLMLSEEGKLIAEQGRYYLPSLYFAEKGIVSNIKRLLGQTPPS
AFAESEFLLALGALEERLGMQYAPQQREAIQQALSSPLFILTGGPGTGKTTVIKGIVELFAALNGLSIDPADYKQGEPFP
VLLAAPTGRAAKRMSEATGLPAATIHRLLGWNGAEGFSRDENEPISGKLLVIDEMSMVDTWLANQLLKAVPNGMQVIFVG
DEDQLPSVGPGQVLKDLLSSGVIPFARLTEVYRQAEGSSIIELAHKMKRGVVPDDLTAPKADRSFIRCRAGQVVDVVRQI
ADNARKKGFSVKDIQVLAPMYRGPAGIDQLNKALQELFNPPAEGKRELSVGEVVYRVGDKVLQLVNQPEDNVFNGDIGEI
VAIFYAKENIEKQDLLVVSFDGIEVTYTRQDLGQITHAYCCSVHKAQGSEFPIVILPVVKNYYRMLKRNLLYTAVTRSKQ
FLVLCGEEEAFRFGVAKQSDGARQTALAEKLAGAAAPFVEVELPFEEANMGMENVTPYDFMGDEPS

Nucleotide

• Length: 2361 bp

>NTDB_id=39380 GYMC52_RS13015 WP_013524203.1 2642763..2645123(-) (recD2) [Geobacillus sp. Y412MC52]
TTGCAAGAGCAACAAATCCTCGCCCTTGACGGACGCACGTTCATTAAAGGAGTGTGCTTGGCGGTCATTTTTCATAATGA
GGAAACATTGTACACGGTCGTCCGCGTGCGCGTTGAGGAAACGAACGAAGCGCCCGTTGAGGAGGAAGTCGTCGTCACCG
GCTATTTTCCGCGTTTAAACGAAGGGGACGTCTACATCTTTTACGGACAATTCCGCCAACATCCGCGTTTTGGCCGCCAA
TATGCGGCTAGTCAGTTCCGCAAACAGCTTCCGAACACGAAAGAAGGAGTCATTCATTATTTATCGAGCGGTTTGTTTAA
AGGAATCGGCAAAAAAACGGCTGCGGCGATTGTCGAGACGCTCGGCGAAAACGCGATCGCCGCGATTTTGCGCGACCCCA
AGGCGCTAGAGCGTGTGCCGAAGCTGACGAAAAAAAAGGCGAAGCAGCTGTACGATGCGCTTCGCGCCCACGAAGGGCTT
GAGCAAACGATGATCGCCCTCGCCCAGCTCGGTTTTGGCCCGCAGCTGGCCATGAAAATTTACCAAGCGTATGGCGAAGA
AGCGATTGACATCATCCACGAGAACCCGTACCAGCTCGTTGAGGATATCGAAGGGATCGGCTTTGGCCGCGCTGATGAAA
TCGGGCGCCAGCTCGGCATTTCCGGCAGCCATCCGGCCCGGCTGCGCGCCGCCTCGTTGTTTGTTCTTGAACAGGCGTGC
TTGCAGGAAGGGCACGTTTATTTGCGCGAGGAAGAGCTGATGGAGCGCATCGGGGAGCTGCTTGACGGAAGGCTGAGCGG
TGCGGTGGATGGACGAGCGATCAGCCAAACGCTTCTGATGTTAAGCGAGGAAGGGAAGCTGATCGCCGAGCAAGGGCGTT
ATTATCTCCCTTCCCTTTACTTCGCCGAGAAAGGGATCGTCTCCAACATTAAGCGGCTGCTCGGGCAGACGCCGCCGTCG
GCGTTTGCCGAGTCGGAGTTTTTGCTGGCGCTTGGGGCGCTTGAGGAACGGCTTGGCATGCAATATGCCCCCCAGCAAAG
GGAAGCGATCCAACAAGCGCTTTCTTCGCCGCTGTTTATTTTGACCGGCGGTCCGGGAACGGGGAAAACGACGGTCATCA
AAGGCATCGTCGAGCTGTTTGCCGCCCTAAACGGCCTGTCTATTGACCCGGCTGACTACAAACAAGGCGAGCCGTTTCCG
GTGCTGCTGGCCGCACCGACCGGCCGAGCGGCGAAGCGGATGAGCGAGGCGACCGGGCTGCCGGCGGCGACGATCCACCG
CTTGCTCGGCTGGAATGGGGCGGAAGGGTTCAGCCGCGACGAGAACGAACCGATTTCCGGCAAGCTGCTTGTCATCGATG
AGATGTCGATGGTCGACACGTGGCTCGCCAACCAGCTGTTAAAAGCCGTGCCAAACGGCATGCAAGTCATTTTCGTCGGC
GATGAGGATCAATTGCCATCCGTGGGGCCAGGGCAAGTGCTGAAAGACTTGCTCTCTTCAGGCGTCATTCCGTTCGCTCG
GTTGACCGAGGTGTATCGCCAGGCGGAAGGATCATCGATCATCGAGCTTGCTCATAAGATGAAGCGCGGCGTCGTGCCGG
ACGATTTGACCGCTCCGAAGGCAGACCGTTCCTTCATCCGCTGCCGTGCGGGCCAGGTCGTCGATGTCGTGCGGCAAATC
GCGGACAACGCGCGCAAAAAAGGGTTTTCCGTCAAAGATATTCAAGTGCTCGCCCCGATGTACCGTGGTCCAGCGGGCAT
TGACCAATTGAACAAGGCGCTTCAAGAGCTGTTCAACCCGCCGGCTGAGGGGAAGCGGGAGCTGTCGGTCGGTGAGGTCG
TCTACCGCGTCGGCGATAAGGTGCTGCAGCTCGTCAATCAACCGGAAGACAATGTGTTTAACGGCGACATCGGCGAAATC
GTTGCCATTTTTTACGCCAAAGAAAATATCGAAAAGCAAGACTTGCTCGTCGTCTCGTTTGATGGCATTGAAGTGACGTA
CACACGGCAAGATTTAGGACAAATCACCCATGCGTACTGCTGTTCGGTTCATAAGGCGCAAGGAAGCGAGTTTCCAATCG
TCATTTTGCCCGTCGTCAAAAACTATTACCGGATGTTGAAACGGAATTTGTTGTATACTGCGGTGACAAGAAGCAAGCAG
TTTCTCGTTTTATGCGGGGAAGAGGAAGCGTTTCGATTCGGCGTCGCAAAACAAAGCGACGGAGCGCGCCAGACGGCGCT
CGCTGAGAAGCTGGCGGGGGCGGCGGCGCCGTTTGTCGAGGTCGAACTGCCGTTTGAAGAGGCGAACATGGGGATGGAAA
ACGTTACGCCGTATGACTTTATGGGCGATGAGCCAAGCTAA

Domains

Predicted by InterproScan.

• AAA domain (AAA_30) (341-548)

• Helix-hairpin-helix domain (HHH_5) (107-155)

• ATP-dependent RecD-like DNA helicase SH3 domain (SH3_13) (590-660)

• Helix-hairpin-helix containing domain (HHH_RecD2) (157-247)

• UvrD-like helicase C-terminal domain (UvrD_C_2) (677-725)

3D structure

• AlphaFold DB: A0A0E0TEC6

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
recD2	Bacillus subtilis subsp. subtilis str. 168	59.848	100	0.603