Detailed information    

insolico Bioinformatically predicted

Overview

Name   codY   Type   Regulator
Locus tag   FIU87_RS09125 Genome accession   NZ_CP045403
Coordinates   1737753..1738532 (+) Length   259 a.a.
NCBI ID   WP_060665889.1    Uniprot ID   A0A0N0VNG7
Organism   Bacillus sp. THAF10     
Function   repression of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 1732753..1743532
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FIU87_RS09105 (FIU87_09380) trmFO 1733269..1734570 (+) 1302 WP_152444303.1 FADH(2)-oxidizing methylenetetrahydrofolate--tRNA-(uracil(54)-C(5))- methyltransferase TrmFO -
  FIU87_RS09110 (FIU87_09385) xerC 1734635..1735543 (+) 909 WP_152444304.1 tyrosine recombinase XerC -
  FIU87_RS09115 (FIU87_09390) hslV 1735569..1736111 (+) 543 WP_152444305.1 ATP-dependent protease subunit HslV -
  FIU87_RS09120 (FIU87_09395) hslU 1736129..1737529 (+) 1401 WP_152444306.1 HslU--HslV peptidase ATPase subunit -
  FIU87_RS09125 (FIU87_09400) codY 1737753..1738532 (+) 780 WP_060665889.1 GTP-sensing pleiotropic transcriptional regulator CodY Regulator
  FIU87_RS09130 (FIU87_09405) flgB 1738795..1739184 (+) 390 WP_152444307.1 flagellar basal body rod protein FlgB -
  FIU87_RS09135 (FIU87_09410) flgC 1739184..1739636 (+) 453 WP_152444308.1 flagellar basal body rod protein FlgC -
  FIU87_RS09140 (FIU87_09415) fliE 1739650..1739943 (+) 294 WP_152446484.1 flagellar hook-basal body complex protein FliE -
  FIU87_RS09145 (FIU87_09420) fliF 1740001..1741590 (+) 1590 WP_152444309.1 flagellar basal-body MS-ring/collar protein FliF -
  FIU87_RS09150 (FIU87_09425) fliG 1741610..1742629 (+) 1020 WP_152444310.1 flagellar motor switch protein FliG -
  FIU87_RS09155 (FIU87_09430) fliH 1742622..1743398 (+) 777 WP_172971002.1 flagellar assembly protein FliH -

Sequence

Protein


Download         Length: 259 a.a.        Molecular weight: 29023.44 Da        Isoelectric Point: 4.8194

>NTDB_id=393799 FIU87_RS09125 WP_060665889.1 1737753..1738532(+) (codY) [Bacillus sp. THAF10]
MPLLQKTRTINAMLQRAAGKPVNFKEMSETLCNVIEANVFVLSRRGKLLGYSINQQIENERMIKMLEDRQFPEEYTKNLF
NISETSSNLDVESEYTAFPVENKELFKSGLTTIVPIIGGGERLGTLILARLQEPFSDDDLILAEYGATVVGMEILREKAE
EIEEEARSKAVVQMAISSLSYSELEAIEHIFEELDGKEGLLVASKIADRVGITRSVIVNALRKLESAGVIESRSLGMKGT
YIKVLNDKFLFELSKLKSH

Nucleotide


Download         Length: 780 bp        

>NTDB_id=393799 FIU87_RS09125 WP_060665889.1 1737753..1738532(+) (codY) [Bacillus sp. THAF10]
ATGCCATTATTACAGAAAACGAGAACTATTAACGCAATGCTACAAAGAGCAGCTGGTAAGCCAGTAAACTTTAAAGAAAT
GTCAGAAACATTATGCAATGTGATTGAAGCGAATGTATTCGTTCTTTCTCGCCGCGGTAAACTATTAGGCTATTCCATTA
ACCAACAAATAGAAAACGAGCGCATGATTAAAATGCTTGAAGATCGCCAGTTTCCAGAGGAGTATACGAAAAACCTTTTC
AATATTTCAGAAACTTCTTCTAACCTTGATGTAGAGAGCGAGTACACTGCTTTCCCTGTTGAAAACAAGGAGCTGTTTAA
ATCTGGCTTAACGACAATCGTTCCAATCATTGGAGGTGGAGAGAGATTAGGAACACTAATCCTTGCTCGTTTACAAGAGC
CATTCTCCGATGATGATTTAATATTAGCAGAATACGGAGCAACCGTTGTAGGAATGGAAATTCTCCGTGAAAAAGCAGAA
GAAATTGAAGAAGAGGCAAGAAGTAAAGCAGTCGTGCAAATGGCGATCAGTTCCTTATCCTATAGTGAGCTTGAAGCAAT
TGAACATATTTTTGAAGAACTTGATGGAAAAGAAGGATTGCTCGTAGCAAGTAAAATTGCTGACAGAGTTGGAATTACCC
GTTCTGTAATTGTAAATGCATTGCGTAAATTAGAGAGCGCTGGTGTTATTGAATCTCGTTCATTAGGAATGAAAGGAACG
TATATCAAAGTCTTAAACGACAAGTTCCTATTTGAATTATCAAAATTAAAATCCCACTAA

Domains

Predicted by InterproScan.

CodY helix-turn-helix domain (HTH_CodY)

(198-254)

CodY GAF-like domain (CodY)

(3-178)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0N0VNG7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  codY Bacillus subtilis subsp. subtilis str. 168

88.417

100

0.884
  codY Lactococcus lactis subsp. lactis strain DGCC12653

48.235

98.456

0.475

Multiple sequence alignment