Detailed information    

insolico Bioinformatically predicted

Overview

Name   comF   Type   Machinery gene
Locus tag   FIU99_RS00500 Genome accession   NZ_CP045355
Coordinates   108917..109621 (+) Length   234 a.a.
NCBI ID   WP_006957196.1    Uniprot ID   -
Organism   Vibrio sp. THAF64     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 103917..114621
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FIU99_RS00485 (FIU99_00500) - 105080..107407 (+) 2328 WP_006957200.1 Tex family protein -
  FIU99_RS00490 (FIU99_00505) - 107481..107951 (-) 471 WP_006957199.1 hypothetical protein -
  FIU99_RS00495 (FIU99_00510) bioH 108061..108858 (-) 798 WP_006957197.1 pimeloyl-ACP methyl ester esterase BioH -
  FIU99_RS00500 (FIU99_00515) comF 108917..109621 (+) 705 WP_006957196.1 amidophosphoribosyltransferase Machinery gene
  FIU99_RS00505 (FIU99_00520) nfuA 109715..110302 (+) 588 WP_006957194.1 Fe-S biogenesis protein NfuA -
  FIU99_RS00510 (FIU99_00525) nudE 110434..110982 (+) 549 WP_006957191.1 ADP compounds hydrolase NudE -
  FIU99_RS00515 (FIU99_00530) cysQ 111009..111836 (+) 828 WP_006957188.1 3'(2'),5'-bisphosphate nucleotidase CysQ -
  FIU99_RS00520 (FIU99_00535) recG 111929..114007 (-) 2079 WP_006957187.1 ATP-dependent DNA helicase RecG -

Sequence

Protein


Download         Length: 234 a.a.        Molecular weight: 27131.58 Da        Isoelectric Point: 8.5366

>NTDB_id=393595 FIU99_RS00500 WP_006957196.1 108917..109621(+) (comF) [Vibrio sp. THAF64]
MLTDWIKKHTAYLLPSHCDLCQMAIGSQAAHPLFCCFCLRRFAPVPRCRRCGLVTSEYVEMCGECLVAPPLWTHLYCVGD
YQPPLSSYVHRLKYEGQYWQAKTLSLLLVSRIDTRPDLITFVPLHWRRYCYRGYNQSQHLAWQIGRELDVPCEALFKKKR
ATERQQGMDKKQRKENVRQAFHLRKSINAEHVAIVDDVLTTGSTVHQLCELLLDAGVKTIDIYCICRTPEPSSR

Nucleotide


Download         Length: 705 bp        

>NTDB_id=393595 FIU99_RS00500 WP_006957196.1 108917..109621(+) (comF) [Vibrio sp. THAF64]
ATGTTAACCGATTGGATTAAGAAACACACAGCCTACCTGTTACCCAGTCATTGCGATTTGTGCCAGATGGCGATCGGATC
GCAAGCGGCGCACCCCTTATTCTGCTGTTTCTGTCTGCGACGTTTTGCGCCAGTTCCTCGCTGCAGACGATGTGGCTTGG
TGACCTCTGAGTACGTCGAAATGTGTGGGGAATGTTTAGTTGCCCCGCCATTGTGGACGCACTTGTATTGTGTCGGAGAC
TATCAACCGCCGCTATCGAGTTACGTTCACCGACTTAAGTACGAAGGTCAGTACTGGCAGGCTAAAACCTTGTCTTTGCT
GTTGGTGTCACGCATCGACACTCGACCAGACCTGATTACTTTTGTCCCCTTGCACTGGCGTCGTTACTGTTATCGTGGCT
ACAACCAAAGTCAGCATCTGGCATGGCAAATTGGTCGAGAGCTGGATGTGCCTTGTGAGGCTCTATTTAAGAAAAAGCGT
GCAACGGAAAGGCAACAAGGAATGGATAAAAAGCAGCGTAAGGAGAATGTGCGTCAGGCTTTTCATCTAAGAAAGTCGAT
AAATGCCGAGCATGTCGCTATTGTCGATGATGTGTTAACTACGGGCAGTACAGTACATCAATTATGTGAATTATTGCTTG
ATGCTGGAGTGAAAACCATTGATATTTATTGCATTTGTCGCACTCCTGAACCTTCTAGCCGCTAA

Domains

Predicted by InterproScan.

Phosphoribosyl transferase domain (Pribosyltran)

(141-230)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comF Vibrio cholerae strain A1552

51.293

99.145

0.509
  comF Vibrio campbellii strain DS40M4

46.053

97.436

0.449

Multiple sequence alignment