Detailed information    

insolico Bioinformatically predicted

Overview

Name   comF   Type   Machinery gene
Locus tag   HPT09_RS19880 Genome accession   NZ_CP053706
Coordinates   4288293..4288718 (+) Length   141 a.a.
NCBI ID   WP_003094721.1    Uniprot ID   G3XD43
Organism   Pseudomonas aeruginosa strain PAC1     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 4283293..4293718
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HPT09_RS19865 (HPT09_19870) pilX 4283857..4284444 (+) 588 WP_003112826.1 type 4a pilus minor pilin PilX -
  HPT09_RS19870 (HPT09_19875) pilY1 4284456..4287947 (+) 3492 WP_010793785.1 type 4a pilus biogenesis protein PilY1 -
  HPT09_RS19875 (HPT09_19880) pilY2 4287949..4288296 (+) 348 WP_003102609.1 type 4a fimbrial biogenesis protein PilY2 -
  HPT09_RS19880 (HPT09_19885) comF 4288293..4288718 (+) 426 WP_003094721.1 type 4a pilus minor pilin PilE Machinery gene
  HPT09_RS19885 (HPT09_19890) ispH 4288765..4289709 (-) 945 WP_003094724.1 4-hydroxy-3-methylbut-2-enyl diphosphate reductase -
  HPT09_RS19890 (HPT09_19895) fkpB 4289795..4290235 (-) 441 WP_003161775.1 FKBP-type peptidyl-prolyl cis-trans isomerase -
  HPT09_RS19895 (HPT09_19900) lspA 4290228..4290737 (-) 510 WP_003102615.1 signal peptidase II -
  HPT09_RS19900 (HPT09_19905) ileS 4290730..4293561 (-) 2832 WP_003102617.1 isoleucine--tRNA ligase -

Sequence

Protein


Download         Length: 141 a.a.        Molecular weight: 15279.30 Da        Isoelectric Point: 10.0198

>NTDB_id=393565 HPT09_RS19880 WP_003094721.1 4288293..4288718(+) (comF) [Pseudomonas aeruginosa strain PAC1]
MRTRQKGFTLLEMVVVVAVIGILLGIAIPSYQNYVIRSNRTEGQALLSDAAARQERYYSQNPGVGYTKDVAKLGMSSANS
PNNLYNLTIATPTSTTYTLTATPINSQTRDKTCGKLTLNQLGERGAAGKTGNNSTVNDCWR

Nucleotide


Download         Length: 426 bp        

>NTDB_id=393565 HPT09_RS19880 WP_003094721.1 4288293..4288718(+) (comF) [Pseudomonas aeruginosa strain PAC1]
ATGAGGACAAGACAGAAGGGCTTCACGTTGCTGGAAATGGTGGTGGTAGTGGCGGTGATCGGCATCCTCCTCGGCATCGC
CATTCCCAGTTACCAGAACTACGTGATCCGCTCCAACCGCACCGAGGGGCAGGCGCTGCTCTCGGACGCGGCCGCGCGCC
AGGAACGCTACTACTCGCAGAACCCCGGGGTCGGCTACACCAAGGACGTGGCCAAGCTGGGCATGAGTTCGGCCAACTCG
CCGAACAACCTGTACAACCTCACCATAGCGACGCCCACCAGCACCACCTATACCCTGACCGCCACGCCGATCAACTCGCA
GACCCGCGACAAGACCTGCGGCAAGCTGACCCTCAATCAGCTCGGCGAACGCGGCGCAGCCGGCAAGACCGGCAACAACA
GCACCGTCAACGACTGCTGGCGCTGA

Domains

Predicted by InterProScan.

Type IV minor pilin ComP, DNA uptake sequence receptor (ComP_DUS)

(29-117)

Prokaryotic N-terminal methylation motif (N_methyl)

(3-27)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  PDB 4NOA

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comF Acinetobacter baylyi ADP1

42.188

90.78

0.383