Detailed information    

insolico Bioinformatically predicted

Overview

Name   comF   Type   Machinery gene
Locus tag   FIV01_RS00600 Genome accession   NZ_CP045350
Coordinates   131254..131979 (+) Length   241 a.a.
NCBI ID   WP_152429281.1    Uniprot ID   A0A5P9CF79
Organism   Vibrio aquimaris strain THAF100     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 126254..136979
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FIV01_RS00585 (FIV01_00595) - 127445..129754 (+) 2310 WP_152429278.1 Tex family protein -
  FIV01_RS00590 (FIV01_00600) - 129812..130282 (-) 471 WP_152429279.1 ATP-dependent Lon protease -
  FIV01_RS00595 (FIV01_00605) bioH 130394..131191 (-) 798 WP_152429280.1 pimeloyl-ACP methyl ester esterase BioH -
  FIV01_RS00600 (FIV01_00610) comF 131254..131979 (+) 726 WP_152429281.1 phosphoribosyltransferase family protein Machinery gene
  FIV01_RS00605 (FIV01_00615) nfuA 132052..132639 (+) 588 WP_152429282.1 Fe-S biogenesis protein NfuA -
  FIV01_RS00610 (FIV01_00620) nudE 132769..133317 (+) 549 WP_152429283.1 ADP compounds hydrolase NudE -
  FIV01_RS00615 (FIV01_00625) cysQ 133345..134172 (+) 828 WP_152429284.1 3'(2'),5'-bisphosphate nucleotidase CysQ -
  FIV01_RS00620 (FIV01_00630) recG 134198..136276 (-) 2079 WP_152429285.1 ATP-dependent DNA helicase RecG -

Sequence

Protein


Download         Length: 241 a.a.        Molecular weight: 27837.61 Da        Isoelectric Point: 8.8638

>NTDB_id=393554 FIV01_RS00600 WP_152429281.1 131254..131979(+) (comF) [Vibrio aquimaris strain THAF100]
MLTDWIGKYTAYLLPKHCDLCGLLIERPHSHPIVCRICLDNMTRQSCCLRCGLIVPVKAEQCGRCLVSPPPWSHLYCVGD
YQQPLSSYIHRLKYSGQFWHAKTLALLLTPHLREKPDLITFVPLHWQRFLYRGYNQSQHLAWEISHSMQVNCFGIFRKVR
ATLRQQGMTKQQRQRNVRQAFKLCLPINAEHVAIVDDVLTTGSTVEPLCELLTQHGVKRIDIYCICRTSEPRDKLSGANL
I

Nucleotide


Download         Length: 726 bp        

>NTDB_id=393554 FIV01_RS00600 WP_152429281.1 131254..131979(+) (comF) [Vibrio aquimaris strain THAF100]
ATGTTAACCGATTGGATTGGTAAATACACAGCTTACCTGTTACCCAAACATTGCGACTTATGCGGCTTACTTATTGAGAG
GCCGCATTCTCATCCCATTGTGTGTCGTATCTGCTTGGATAATATGACTCGTCAGTCTTGCTGTTTACGTTGTGGGCTTA
TCGTTCCAGTCAAAGCGGAGCAATGTGGGCGCTGTCTTGTTTCACCGCCTCCTTGGTCGCATCTGTATTGTGTCGGTGAT
TATCAACAGCCTCTGTCAAGTTATATTCATCGATTAAAGTATTCTGGGCAGTTTTGGCATGCAAAGACACTGGCTTTACT
ACTTACTCCTCACCTTAGGGAAAAACCTGACTTGATTACTTTTGTGCCACTGCACTGGCAGCGCTTTTTATATCGAGGCT
ATAACCAAAGCCAGCACTTGGCTTGGGAGATTAGTCACTCGATGCAGGTTAACTGCTTCGGTATTTTTCGTAAAGTCAGA
GCAACACTGCGCCAACAAGGTATGACTAAACAGCAAAGACAACGCAATGTCAGGCAGGCTTTTAAGCTGTGCCTCCCTAT
CAATGCTGAACATGTCGCCATTGTTGATGATGTTCTAACCACAGGAAGTACGGTTGAACCTTTGTGCGAACTTCTTACTC
AGCATGGAGTGAAAAGGATTGATATATATTGCATTTGCCGAACCTCTGAACCTAGGGATAAGCTGAGTGGTGCGAATTTG
ATCTAA

Domains

Predicted by InterproScan.

Phosphoribosyl transferase domain (Pribosyltran)

(187-232)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A5P9CF79

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comF Vibrio cholerae strain A1552

49.787

97.51

0.485
  comF Vibrio campbellii strain DS40M4

42.92

93.776

0.402

Multiple sequence alignment