Detailed information    

insolico Bioinformatically predicted

Overview

Name   comF   Type   Machinery gene
Locus tag   FIV04_RS27375 Genome accession   NZ_CP045338
Coordinates   131609..132331 (-) Length   240 a.a.
NCBI ID   WP_152467965.1    Uniprot ID   A0A5P9B2W3
Organism   Vibrio sp. THAF190c     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 126609..137331
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FIV04_RS00555 (FIV04_00570) gspL 126664..127890 (+) 1227 WP_152467961.1 type II secretion system protein GspL -
  FIV04_RS00560 (FIV04_00575) - 127911..128399 (+) 489 WP_150870497.1 type II secretion system protein M -
  FIV04_RS00565 (FIV04_00580) - 128401..129180 (+) 780 WP_152467962.1 type II secretion system protein N -
  FIV04_RS00570 (FIV04_00585) cysQ 129246..130073 (-) 828 WP_152467963.1 3'(2'),5'-bisphosphate nucleotidase CysQ -
  FIV04_RS00575 (FIV04_00590) nudE 130084..130647 (-) 564 WP_152467964.1 ADP compounds hydrolase NudE -
  FIV04_RS00580 (FIV04_00595) nfuA 130916..131500 (-) 585 WP_032551117.1 Fe-S biogenesis protein NfuA -
  FIV04_RS27375 (FIV04_00600) comF 131609..132331 (-) 723 WP_152467965.1 ComF family protein Machinery gene
  FIV04_RS00590 (FIV04_00605) bioH 132423..133199 (+) 777 WP_152467966.1 pimeloyl-ACP methyl ester esterase BioH -
  FIV04_RS00595 (FIV04_00610) - 133374..133847 (+) 474 WP_032551121.1 hypothetical protein -
  FIV04_RS00600 (FIV04_00615) - 134041..136362 (-) 2322 WP_152467967.1 Tex family protein -

Sequence

Protein


Download         Length: 240 a.a.        Molecular weight: 27551.03 Da        Isoelectric Point: 9.5039

>NTDB_id=393513 FIV04_RS27375 WP_152467965.1 131609..132331(-) (comF) [Vibrio sp. THAF190c]
MLSDWLQKHTPRLVTPQCHLCKLPKLPQDSHPKWCNSCLSHFAPQHRCQRCGIKLNIDATICGACLKKPPPWHRLYCVGD
YDFPLNHYVHQMKYSGQFWLSRDLVKLLANHIEQPAPIITSVPLHWRRYLHRGFNQSALLADALAHELNSQSLALFRRQR
ATPTQQGLSKTQRQHNLRNVFSFRNKDVMKVIAKGDAHVAIMDDVVTTGSTVYQLCQLLLEVGAKRIDIYCICRTPEPAS

Nucleotide


Download         Length: 723 bp        

>NTDB_id=393513 FIV04_RS27375 WP_152467965.1 131609..132331(-) (comF) [Vibrio sp. THAF190c]
ATGTTATCTGATTGGCTCCAAAAACACACACCACGCTTGGTCACACCACAATGTCATCTCTGCAAACTGCCAAAGCTACC
TCAAGATAGTCATCCTAAATGGTGTAATAGCTGCCTATCTCATTTCGCACCACAACACCGCTGCCAACGTTGCGGTATCA
AGCTTAATATCGATGCCACCATATGTGGGGCATGTTTAAAAAAACCACCGCCATGGCATCGGCTCTATTGTGTTGGAGAT
TACGATTTTCCACTCAACCATTACGTCCACCAGATGAAATACAGTGGTCAATTTTGGTTAAGTCGAGACTTAGTCAAACT
GCTGGCGAACCATATTGAGCAGCCCGCCCCTATTATCACTAGTGTGCCGCTGCATTGGCGGCGCTACCTACACCGCGGAT
TTAATCAAAGCGCATTGCTAGCCGATGCTCTTGCGCACGAACTTAACAGCCAAAGCCTAGCGCTGTTTCGTCGTCAACGT
GCCACCCCGACTCAGCAAGGGTTAAGTAAGACACAACGCCAGCACAACCTGCGTAATGTTTTTTCTTTTAGAAACAAGGA
TGTGATGAAAGTGATAGCAAAAGGCGACGCCCATGTTGCAATAATGGATGATGTCGTCACCACAGGCAGTACCGTGTATC
AATTATGTCAATTGCTACTTGAAGTGGGCGCTAAAAGGATTGATATTTACTGCATCTGCCGCACTCCTGAACCCGCGTCT
TAG

Domains

Predicted by InterproScan.

Phosphoribosyl transferase domain (Pribosyltran)

(137-237)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A5P9B2W3

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comF Vibrio cholerae strain A1552

54.393

99.583

0.542
  comF Vibrio campbellii strain DS40M4

50

100

0.517

Multiple sequence alignment