Detailed information    

insolico Bioinformatically predicted

Overview

Name   comF   Type   Machinery gene
Locus tag   HPT10_RS24810 Genome accession   NZ_CP053705
Coordinates   5349952..5350377 (+) Length   141 a.a.
NCBI ID   WP_023107845.1    Uniprot ID   -
Organism   Pseudomonas aeruginosa strain PAC6     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 5344952..5355377
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HPT10_RS24795 (HPT10_24820) pilX 5345516..5346103 (+) 588 WP_003094700.1 type 4a pilus minor pilin PilX -
  HPT10_RS24800 (HPT10_24825) pilY1 5346115..5349606 (+) 3492 WP_129373825.1 type 4a pilus biogenesis protein PilY1 -
  HPT10_RS24805 (HPT10_24830) pilY2 5349608..5349955 (+) 348 WP_021264112.1 type 4a fimbrial biogenesis protein PilY2 -
  HPT10_RS24810 (HPT10_24835) comF 5349952..5350377 (+) 426 WP_023107845.1 type 4a pilus minor pilin PilE Machinery gene
  HPT10_RS24815 (HPT10_24840) ispH 5350424..5351368 (-) 945 WP_003094724.1 4-hydroxy-3-methylbut-2-enyl diphosphate reductase -
  HPT10_RS24820 (HPT10_24845) fkpB 5351454..5351894 (-) 441 WP_023107846.1 FKBP-type peptidyl-prolyl cis-trans isomerase -
  HPT10_RS24825 (HPT10_24850) lspA 5351887..5352396 (-) 510 WP_003110420.1 signal peptidase II -
  HPT10_RS24830 (HPT10_24855) ileS 5352389..5355220 (-) 2832 WP_171888706.1 isoleucine--tRNA ligase -

Sequence

Protein


Download         Length: 141 a.a.        Molecular weight: 15309.33 Da        Isoelectric Point: 10.0198

>NTDB_id=393482 HPT10_RS24810 WP_023107845.1 5349952..5350377(+) (comF) [Pseudomonas aeruginosa strain PAC6]
MRTRQKGFTLLEMVVVVAVIGILLGIAIPSYQNYVIRSNRTEGQALLSDAAARQERYYSQNPGVGYTKDVTKLGMSSANS
PNNLYNLTIATPTSTTYTLTATPINSQTRDKTCGKLTLNQLGERGAAGKTGNNSTVNDCWR

Nucleotide


Download         Length: 426 bp        

>NTDB_id=393482 HPT10_RS24810 WP_023107845.1 5349952..5350377(+) (comF) [Pseudomonas aeruginosa strain PAC6]
ATGAGGACAAGACAGAAGGGCTTCACGTTGCTGGAAATGGTGGTGGTAGTGGCGGTGATCGGCATCCTCCTCGGCATCGC
CATTCCCAGCTACCAGAACTACGTGATCCGCTCCAACCGCACCGAGGGCCAGGCGCTGCTCTCGGACGCGGCCGCGCGCC
AGGAACGCTACTACTCGCAGAACCCCGGGGTCGGCTACACCAAGGACGTGACCAAACTGGGCATGAGTTCGGCCAACTCG
CCGAACAACCTGTACAACCTCACCATAGCGACGCCCACCAGCACCACTTATACCCTGACCGCCACGCCGATCAACTCGCA
GACCCGCGACAAGACCTGCGGCAAGCTGACCCTCAATCAGCTCGGCGAACGCGGCGCAGCCGGCAAGACCGGCAACAACA
GCACCGTCAACGACTGCTGGCGCTGA

Domains

Predicted by InterProScan.

Type IV minor pilin ComP, DNA uptake sequence receptor (ComP_DUS)

(29-117)

Prokaryotic N-terminal methylation motif (N_methyl)

(3-27)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comF Acinetobacter baylyi ADP1

41.406

90.78

0.376