Detailed information    

insolico Bioinformatically predicted

Overview

Name   comF   Type   Machinery gene
Locus tag   HPT10_RS02575 Genome accession   NZ_CP053705
Coordinates   555836..556561 (-) Length   241 a.a.
NCBI ID   WP_171888852.1    Uniprot ID   -
Organism   Pseudomonas aeruginosa strain PAC6     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 550836..561561
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HPT10_RS02550 (HPT10_02550) - 551308..551823 (+) 516 WP_003084789.1 glycine cleavage system protein R -
  HPT10_RS02555 (HPT10_02555) rarD 552513..553409 (-) 897 WP_003103301.1 EamA family transporter RarD -
  HPT10_RS02560 (HPT10_02560) - 553612..554586 (-) 975 WP_023107657.1 serine/threonine protein kinase -
  HPT10_RS02565 (HPT10_02565) - 554648..555406 (-) 759 WP_003084796.1 TOBE domain-containing protein -
  HPT10_RS02570 (HPT10_02570) - 555474..555794 (-) 321 WP_003103307.1 YfiM family lipoprotein -
  HPT10_RS02575 (HPT10_02575) comF 555836..556561 (-) 726 WP_171888852.1 ComF family protein Machinery gene
  HPT10_RS02580 (HPT10_02580) - 556700..556993 (-) 294 WP_003084806.1 hypothetical protein -
  HPT10_RS02585 (HPT10_02585) - 557047..557972 (-) 926 Protein_514 LysR family transcriptional regulator -
  HPT10_RS02590 (HPT10_02590) - 558090..558848 (+) 759 WP_034015984.1 5-oxoprolinase subunit PxpA -
  HPT10_RS02595 (HPT10_02595) - 558925..559173 (+) 249 WP_003084813.1 acetyl-CoA carboxylase -
  HPT10_RS02600 (HPT10_02600) - 559184..560560 (+) 1377 WP_171888853.1 acetyl-CoA carboxylase biotin carboxylase subunit -
  HPT10_RS02605 (HPT10_02605) - 560562..561440 (+) 879 WP_065278716.1 allophanate hydrolase subunit 1 -

Sequence

Protein


Download         Length: 241 a.a.        Molecular weight: 27030.56 Da        Isoelectric Point: 11.3830

>NTDB_id=393420 HPT10_RS02575 WP_171888852.1 555836..556561(-) (comF) [Pseudomonas aeruginosa strain PAC6]
MSFPLRPLTRWLLPPPACLLCAARSDQPPRPLCRACAADLPWSRQQCRRCALPLPLDGQVCGECLRRPPAYEQAIAPWRY
AFPLDSLINRFKHQAAWPLGRLLGELLAEHLRQRYAEGLPRPARLLPVPLAPRRERRRGFNQAQQLAERLAGALDLRCDP
HSLRRVLDTPAQQGLDATVRRRNLRHAFALAPASDVRGLHLALVDDVLTTGATAERLSRLLRRAGAARVDVYCLARTPKP
G

Nucleotide


Download         Length: 726 bp        

>NTDB_id=393420 HPT10_RS02575 WP_171888852.1 555836..556561(-) (comF) [Pseudomonas aeruginosa strain PAC6]
ATGTCGTTCCCGCTTCGTCCTCTCACGCGCTGGCTTTTGCCGCCGCCGGCCTGCCTGCTCTGCGCCGCCCGCAGCGACCA
GCCGCCCCGCCCGCTGTGCCGCGCCTGTGCCGCCGACCTGCCCTGGTCGCGCCAGCAGTGCCGGCGCTGCGCCCTGCCCC
TGCCGCTGGACGGCCAGGTGTGCGGCGAGTGCCTGCGCCGCCCGCCGGCCTATGAACAGGCGATCGCGCCCTGGCGCTAC
GCCTTTCCGCTCGACAGCCTGATCAACCGCTTCAAGCACCAGGCGGCCTGGCCGCTGGGGCGGCTGCTCGGCGAGCTGCT
GGCGGAACACCTGCGGCAACGCTACGCCGAAGGCCTGCCGCGCCCGGCACGCCTGCTGCCGGTCCCGCTGGCGCCACGGC
GCGAACGTCGGCGCGGCTTCAACCAGGCGCAACAGCTCGCCGAGCGACTGGCTGGCGCGCTGGACCTGCGCTGCGATCCG
CACAGCCTGCGGCGAGTGCTGGATACTCCGGCCCAGCAGGGCCTGGACGCGACGGTGCGGCGGCGCAACCTGCGCCACGC
CTTCGCCCTGGCGCCCGCCAGCGATGTTCGCGGGCTGCACCTGGCACTGGTGGACGACGTGCTCACCACCGGGGCCACCG
CCGAGCGCCTTTCCCGTCTGTTGCGCCGGGCGGGCGCCGCGCGGGTCGACGTCTACTGCCTGGCGCGCACGCCGAAGCCC
GGCTGA

Domains

Predicted by InterProScan.

Phosphoribosyl transferase domain (Pribosyltran)

(139-238)

Double zinc ribbon domain (DZR_2)

(9-65)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comF Vibrio cholerae strain A1552

38.174

100

0.382

Multiple sequence alignment