Detailed information NTG0393364

Bioinformatically predicted

Overview

• Name: recD/recD2/recDB
• Type: Machinery gene
• Locus tag: HPC60_RS09630
• Genome accession: NZ_CP053671
• Coordinates: 1930323..1932827 (-)
• Length: 834 a.a.
• NCBI ID: WP_025016974.1
• Uniprot ID: -
• Organism: Lactococcus lactis subsp. lactis strain G121
• Function: homologous recombination (predicted from homology) Homologous recombination

Genomic Context

Location: 1925323..1937827

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
HPC60_RS09600 (HPC60_04345)	-	1925820..1926011 (-)	192	WP_023164583.1	helix-turn-helix domain-containing protein	-
HPC60_RS09605 (HPC60_04350)	-	1926150..1926698 (+)	549	WP_052484080.1	helix-turn-helix transcriptional regulator	-
HPC60_RS09610 (HPC60_04355)	-	1926749..1927960 (+)	1212	WP_179107679.1	site-specific integrase	-
HPC60_RS09615 (HPC60_04360)	-	1928081..1928995 (-)	915	WP_015426912.1	diacylglycerol kinase family protein	-
HPC60_RS09620 (HPC60_04365)	-	1929151..1929663 (-)	513	WP_003132795.1	HD domain-containing protein	-
HPC60_RS09625 (HPC60_04370)	rpsT	1929996..1930229 (+)	234	WP_010906113.1	30S ribosomal protein S20	-
HPC60_RS09630 (HPC60_04375)	recD/recD2/recDB	1930323..1932827 (-)	2505	WP_025016974.1	ATP-dependent RecD-like DNA helicase	Machinery gene
HPC60_RS09635 (HPC60_04380)	-	1932824..1933417 (-)	594	WP_010906114.1	histidine phosphatase family protein	-
HPC60_RS09640 (HPC60_04385)	pheA	1933420..1934259 (-)	840	WP_023188548.1	prephenate dehydratase	-
HPC60_RS09645 (HPC60_04390)	-	1934261..1934749 (-)	489	WP_023188547.1	shikimate kinase	-
HPC60_RS09650 (HPC60_04395)	aroA	1934773..1936065 (-)	1293	WP_023188546.1	3-phosphoshikimate 1-carboxyvinyltransferase	-
HPC60_RS09655 (HPC60_04400)	-	1936186..1937250 (-)	1065	WP_010906116.1	prephenate dehydrogenase	-

Sequence

Protein

• Length: 834 a.a.
• Molecular weight: 92961.42 Da
• Isoelectric Point: 4.4906

>NTDB_id=393364 HPC60_RS09630 WP_025016974.1 1930323..1932827(-) (recD/recD2/recDB) [Lactococcus lactis subsp. lactis strain G121]
MIEKTYFTGSIEAIFFSNPSNFYKVLLIEIDETNAEYDDFEIVVNGTIGDVVEGDSYTFYGQLTQHPKYGEQLQVSQYEK
AVPTSGAGLVKYFSSDKFPGIGKKTAEKIVETFPENTVDSILEAPEKLDGLLTIARKNSFIKRLRENHGMEKVLTKLAEY
GLPSKITFQIYELYKEETIEKIEENPYQLVEDVKGVGFKTADKIASSLGIEADSPNRFRAALMHEVNTHSQSTGDTYIEA
KNLLEMTIDLLEEARNVEVNPSAVAEEINGLIVDGKVQQEGTKIFENSLYFAEDGIRKSLTALTNRSGKDFADEKLLTVL
AEVERDLEITYDDLQKQAIISAMNQQFFILTGGPGTGKTTIINGFIETYARIHQLDLDPDHYNDDVFPILLAAPTGRASR
RMNELTGLPAATIHRHLGLGQDEAEDALGNELSGALLIVDEFSMVDTWLANKLFQAIPGSMKVLLVGDADQLPSVGPGQI
FADLLKIPEIPSVKLDKIFRQGDDSTITDLAHHIKDGQLPSDFTAKKPDRSYFEVSANFVPQMVEQIASAWQKRGNNPFE
LQILAPMYKGMAGINAMNVLLQNLFNPLNDRLEFALGDMKFREGDKVLHLVNDAEANVFNGDLGQIVELIAAKYTDSKQD
ELVMDFDGQELTYPRAEWYKITLAYAMSIHKSQGSEFSTVIVPMVSSYSRMLERNLLYTAITRAKQSLILLGEERAFAQA
VAREGANRKTYLIERFMGENPAAKNLSVEIVSEKVTDKKEISDKEKKPAAPVELQGQIRSVSKKMPAQVEEISLFEDEEI
ETLDKGSLTEALILSGNFDPLIGLTQQDFAIFNK

Nucleotide

• Length: 2505 bp

>NTDB_id=393364 HPC60_RS09630 WP_025016974.1 1930323..1932827(-) (recD/recD2/recDB) [Lactococcus lactis subsp. lactis strain G121]
ATGATTGAAAAAACTTATTTTACTGGTTCGATTGAGGCAATATTTTTCTCCAATCCCAGTAATTTTTATAAAGTTCTACT
CATTGAAATTGATGAAACTAATGCTGAATATGATGATTTTGAAATTGTGGTTAACGGGACAATTGGGGATGTGGTTGAAG
GAGATTCTTATACATTTTATGGTCAATTGACGCAGCATCCTAAATATGGGGAACAATTACAGGTCAGTCAATATGAAAAA
GCAGTGCCGACTTCTGGTGCTGGTTTAGTTAAATATTTTTCTTCAGATAAATTTCCTGGAATTGGTAAGAAAACGGCAGA
AAAAATTGTTGAAACTTTTCCTGAAAATACGGTAGATTCAATTTTAGAAGCGCCGGAAAAATTGGATGGTCTATTGACTA
TAGCCAGAAAAAATTCATTTATCAAACGATTACGTGAGAATCATGGAATGGAAAAAGTGCTGACCAAGCTTGCAGAATAT
GGCTTACCAAGCAAAATCACTTTTCAAATTTATGAACTTTATAAAGAAGAAACGATTGAAAAAATTGAGGAAAATCCTTA
TCAGCTTGTGGAAGATGTTAAGGGAGTTGGTTTTAAAACAGCTGATAAGATTGCAAGTAGTTTAGGAATTGAAGCGGATA
GCCCTAATCGATTTCGAGCGGCATTGATGCATGAGGTCAATACACATTCGCAATCAACAGGTGATACTTACATTGAAGCC
AAAAATTTACTTGAGATGACGATAGACTTACTTGAAGAAGCTCGTAATGTCGAGGTCAATCCGTCTGCTGTTGCGGAGGA
AATTAATGGTTTAATTGTTGATGGAAAAGTGCAACAAGAAGGAACAAAAATATTTGAGAATTCCTTGTACTTCGCTGAGG
ACGGGATTCGGAAATCACTGACAGCATTAACTAATCGTTCGGGTAAAGATTTTGCTGATGAAAAGTTACTGACAGTATTG
GCTGAAGTTGAAAGAGATTTAGAAATTACTTATGATGATTTGCAAAAGCAAGCCATTATTAGTGCAATGAATCAGCAATT
TTTCATTTTGACTGGTGGACCAGGAACTGGTAAAACAACAATTATCAATGGTTTTATTGAAACTTATGCCCGTATTCATC
AGCTAGATTTGGACCCAGACCATTATAATGATGACGTCTTTCCTATATTACTGGCAGCACCGACTGGTCGAGCTTCAAGA
CGGATGAATGAGTTGACTGGTCTTCCAGCAGCGACGATTCACCGCCATTTGGGTTTGGGACAAGATGAAGCAGAAGATGC
TCTTGGAAATGAATTGTCTGGTGCTCTTTTGATTGTTGACGAATTTTCTATGGTTGATACTTGGTTAGCTAATAAACTTT
TTCAAGCGATTCCTGGTTCAATGAAAGTTCTCCTTGTTGGAGATGCTGACCAGCTTCCTTCTGTGGGGCCAGGACAAATT
TTTGCGGATTTACTAAAAATTCCAGAAATTCCGTCAGTAAAATTGGATAAGATTTTTCGTCAAGGGGATGATTCTACCAT
TACTGATTTAGCTCACCACATCAAAGATGGGCAATTGCCAAGTGATTTCACGGCGAAAAAACCTGACCGTTCTTATTTTG
AGGTCAGTGCTAATTTTGTTCCTCAGATGGTTGAACAAATCGCAAGTGCATGGCAAAAAAGAGGGAATAATCCTTTTGAA
TTACAAATCTTAGCGCCTATGTATAAAGGAATGGCCGGAATTAATGCAATGAATGTTCTTTTGCAAAATCTCTTTAATCC
GCTTAACGACCGACTTGAATTCGCTTTGGGTGATATGAAATTTCGTGAAGGAGATAAAGTTCTTCATTTAGTAAATGATG
CTGAGGCCAATGTATTTAACGGAGATTTGGGACAAATCGTAGAATTGATTGCAGCAAAATATACTGACAGTAAACAAGAT
GAGTTGGTGATGGATTTTGATGGTCAAGAATTGACTTATCCAAGAGCGGAGTGGTATAAAATTACTCTGGCTTATGCTAT
GTCCATTCATAAATCTCAAGGTTCGGAGTTTTCCACAGTTATTGTGCCGATGGTTTCTTCGTATTCACGGATGTTAGAGC
GAAATTTGCTTTATACGGCAATTACAAGGGCTAAACAAAGTCTGATTTTACTTGGTGAAGAACGAGCTTTTGCACAAGCG
GTGGCGCGTGAAGGGGCGAATCGAAAGACCTATCTGATTGAGCGATTTATGGGAGAAAATCCAGCGGCTAAAAATCTGTC
AGTAGAAATTGTGAGTGAAAAAGTTACTGACAAAAAAGAAATATCTGACAAAGAGAAGAAGCCTGCAGCGCCAGTAGAAT
TACAAGGGCAAATTCGTTCTGTCAGTAAAAAAATGCCAGCACAAGTAGAAGAAATTTCTTTATTTGAAGATGAAGAAATT
GAAACACTGGATAAGGGAAGCTTGACAGAAGCACTTATTTTGTCAGGAAATTTTGACCCTTTAATTGGTTTAACTCAACA
AGACTTTGCAATCTTTAATAAATAA

Domains

Predicted by InterProScan.

• ATP-dependent RecD-like DNA helicase SH3 domain (SH3_13) (577-646)

• UvrD-like helicase C-terminal domain (UvrD_C_2) (664-710)

• Helix-hairpin-helix containing domain (HHH_RecD2) (146-237)

• AAA domain (AAA_30) (331-522)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
recD/recD2/recDB	Bacillus subtilis subsp. subtilis str. 168	41.91	90.408	0.379