Detailed information    

insolico Bioinformatically predicted

Overview

Name   xcpW   Type   Machinery gene
Locus tag   GA693_RS04275 Genome accession   NZ_CP045198
Coordinates   790130..790765 (+) Length   211 a.a.
NCBI ID   WP_160241358.1    Uniprot ID   -
Organism   Acinetobacter indicus strain TQ23     
Function   pseudopilus assembly (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 785130..795765
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GA693_RS04240 kdsB 785481..786245 (+) 765 WP_160241362.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  GA693_RS04245 - 786254..787237 (+) 984 WP_160241361.1 DNA polymerase III subunit delta' -
  GA693_RS04250 - 787249..787590 (+) 342 WP_005177501.1 PilZ domain-containing protein -
  GA693_RS04255 - 787620..788393 (+) 774 WP_005177502.1 TatD family hydrolase -
  GA693_RS04260 - 788454..789068 (+) 615 WP_075166784.1 TetR/AcrR family transcriptional regulator -
  GA693_RS04265 - 789074..789646 (+) 573 WP_160241360.1 prepilin-type N-terminal cleavage/methylation domain-containing protein -
  GA693_RS04270 xcpV 789789..790133 (+) 345 WP_252725315.1 type II secretion system protein Machinery gene
  GA693_RS04275 xcpW 790130..790765 (+) 636 WP_160241358.1 type II secretion system minor pseudopilin GspJ Machinery gene
  GA693_RS04280 gspK 790786..791745 (+) 960 WP_171296439.1 type II secretion system minor pseudopilin GspK -
  GA693_RS04285 - 791893..792489 (+) 597 WP_045795751.1 6-carboxytetrahydropterin synthase -
  GA693_RS04290 ung 792531..793244 (+) 714 WP_005177514.1 uracil-DNA glycosylase -
  GA693_RS04295 - 793241..794365 (+) 1125 WP_005177517.1 enoyl-CoA hydratase/isomerase family protein -
  GA693_RS04300 tadA 794369..794890 (+) 522 WP_160241357.1 tRNA adenosine(34) deaminase TadA -
  GA693_RS04305 - 794948..795379 (+) 432 WP_160241356.1 SRPBCC family protein -

Sequence

Protein


Download         Length: 211 a.a.        Molecular weight: 24157.47 Da        Isoelectric Point: 7.3132

>NTDB_id=392601 GA693_RS04275 WP_160241358.1 790130..790765(+) (xcpW) [Acinetobacter indicus strain TQ23]
MIKAKRGFTLVELLVAIAIFAVLSALGWKVFDYLVKVKDRNQWHEQQLEGLQGAYQQILRDSIQIVPLTANINNDIQPAL
VLQNGRFNFSKTGVTDPLQQGIAPTERIEYQYRADEQKLYRLKYANLHQSGHDQPVSSVLLDNVSQFQVSVLNPQELSNW
PDSSIDLNDNQQKRKLPKGIKINLTVQDVQYEWIFSLLNTDFLKSDNKTTS

Nucleotide


Download         Length: 636 bp        

>NTDB_id=392601 GA693_RS04275 WP_160241358.1 790130..790765(+) (xcpW) [Acinetobacter indicus strain TQ23]
ATGATTAAGGCTAAACGCGGATTTACTCTGGTCGAGCTGCTGGTGGCCATTGCCATCTTTGCGGTGCTGTCTGCCTTAGG
CTGGAAAGTATTTGATTATCTGGTCAAGGTCAAAGACCGTAACCAGTGGCATGAACAGCAGTTAGAAGGATTGCAGGGTG
CCTATCAGCAAATCTTGCGTGACAGCATTCAGATTGTACCGCTGACGGCCAACATCAATAATGATATTCAGCCAGCTTTG
GTACTACAAAACGGCCGTTTTAATTTTAGCAAGACCGGTGTGACCGATCCTTTGCAGCAGGGCATTGCCCCCACTGAACG
GATTGAATATCAGTACCGGGCCGATGAACAAAAACTGTATCGTCTGAAATATGCCAATTTGCATCAGTCCGGGCATGATC
AGCCGGTTTCCAGTGTATTGTTGGACAATGTTAGCCAGTTTCAGGTTAGTGTGCTGAATCCGCAGGAACTGAGTAACTGG
CCAGACAGCAGTATTGACTTAAATGATAATCAACAAAAACGCAAACTGCCAAAAGGCATTAAAATAAATTTAACCGTACA
AGATGTACAATATGAATGGATTTTTAGCCTGTTAAATACTGACTTCCTGAAATCAGACAATAAAACCACATCATAA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein J (T2SSJ)

(60-194)

Prokaryotic N-terminal methylation motif (N_methyl)

(3-26)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  xcpW Acinetobacter baumannii D1279779

61.735

92.891

0.573

Multiple sequence alignment