Detailed information NTG0392521

Bioinformatically predicted

Overview

• Name: recD2
• Type: Machinery gene
• Locus tag: D5R78_RS06535
• Genome accession: NZ_CP045187
• Coordinates: 1341904..1344342 (+)
• Length: 812 a.a.
• NCBI ID: WP_119880978.1
• Uniprot ID: -
• Organism: Staphylococcus haemolyticus strain VB19458
• Function: homologous recombination (predicted from homology) Homologous recombination

Genomic Context

Location: 1336904..1349342

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
D5R78_RS13515	-	1337125..1337259 (+)	135	WP_011275593.1	SAS049 family protein	-
D5R78_RS06515 (D5R78_008035)	-	1337481..1338494 (-)	1014	WP_011275594.1	LLM class flavin-dependent oxidoreductase	-
D5R78_RS06520 (D5R78_008030)	-	1338775..1339914 (+)	1140	WP_016930850.1	cysteine desulfurase family protein	-
D5R78_RS06525 (D5R78_008025)	mnmA	1339917..1341029 (+)	1113	WP_011275596.1	tRNA 2-thiouridine(34) synthase MnmA	-
D5R78_RS06530 (D5R78_008020)	-	1341231..1341902 (+)	672	WP_029376633.1	tetratricopeptide repeat protein	-
D5R78_RS06535 (D5R78_008015)	recD2	1341904..1344342 (+)	2439	WP_119880978.1	ATP-dependent RecD-like DNA helicase	Machinery gene
D5R78_RS06540 (D5R78_008010)	alaS	1344641..1347271 (+)	2631	WP_016930853.1	alanine--tRNA ligase	-
D5R78_RS06545 (D5R78_008005)	-	1347338..1347598 (+)	261	WP_011275600.1	IreB family regulatory phosphoprotein	-
D5R78_RS06550 (D5R78_008000)	ruvX	1347602..1348030 (+)	429	WP_011275601.1	Holliday junction resolvase RuvX	-
D5R78_RS06555 (D5R78_007995)	-	1348045..1348359 (+)	315	WP_011275602.1	DUF1292 domain-containing protein	-

Sequence

Protein

• Length: 812 a.a.
• Molecular weight: 91719.32 Da
• Isoelectric Point: 4.7550

>NTDB_id=392521 D5R78_RS06535 WP_119880978.1 1341904..1344342(+) (recD2) [Staphylococcus haemolyticus strain VB19458]
MSDLTLFDYSMIKGTVDAILFQNNDNFYTVIKVETIETNESFGNLPTVVGFFPNIVEGDVYTFKGQVVEHPRYGKQLKAD
TFEKEVPQTKDAIITYLSSDLFKGIGKKTAQNIVNTLGENAINDIMTDASVLEKVSNLPKKKQKQIADQINANQESEKIM
IRLHDLGFGPKLSMAIYQFYQSETLNVLENNPYQLVYDIKGIGFNKADTLARNNGISFNDPERLKAGLLYTLEEECIKQG
HTYLSLDYAIEVTLDMLMDAHSSDSIDSKQLENILELLNEEQKIIVNNERVAIPSLYYSELKSVQNLYRIKTYKHKLKEI
EQSDLQIHIGDIETSNNVHYAPSQKEALQTAINSKIMLLTGGPGTGKTTVIKGIVELYAEVHGLSLSYSDYQEDDYPIVL
AAPTGRASKRLQESTGLEAMTIHRLIGWNQETQPEDILDNEIKAKLIIIDEMSMVDTWLFHQFLSAVPLDAQIILVGDED
QLPSVGPGQIFKDLIDSKAIPRVNLTEVYRQQDGSSIIDLAHRMKHGEPIDITKRFHDRSFISCNVDQIPKVVEKVVSSA
VNKGYDMSDIQVLAPMYKGNAGIKRLNQVLQDILNPKAQDTREIEFGDIKFRKGDKVLQLVNRPNDNIFNGDIGIIVGIF
WAKENALNKDVMVVDFEGNEITFTRQDLLELTHAYCTSIHKSQGSEFPIVIMPIVKQYFRMLQRPILYTGLTRAKQSLVL
LGDSTAFEIGLNTQGQLRHTQLQELILSYFDIDHKQSDVTISNTVSKDEEAMNTIHDVDTKDDQVILSESTLYQINPMIN
MGDVSPYDFVER

Nucleotide

• Length: 2439 bp

>NTDB_id=392521 D5R78_RS06535 WP_119880978.1 1341904..1344342(+) (recD2) [Staphylococcus haemolyticus strain VB19458]
ATGTCTGACCTTACACTATTTGATTATTCAATGATTAAAGGTACTGTAGATGCTATTTTATTTCAAAATAATGATAATTT
CTATACAGTCATTAAAGTGGAAACAATTGAAACTAATGAATCATTTGGTAATTTACCAACAGTTGTAGGGTTCTTTCCAA
ATATTGTGGAAGGAGATGTATACACTTTTAAAGGACAAGTGGTAGAGCACCCACGTTATGGCAAGCAATTGAAAGCCGAC
ACTTTTGAAAAAGAGGTCCCTCAAACTAAGGATGCTATTATTACATATTTATCAAGTGACTTATTCAAAGGTATAGGTAA
AAAAACTGCTCAAAATATTGTAAATACACTTGGTGAAAATGCGATAAATGATATTATGACAGACGCATCAGTTTTAGAGA
AGGTTTCAAATTTACCGAAAAAGAAACAAAAGCAAATTGCTGATCAAATTAATGCCAATCAAGAGTCCGAAAAAATTATG
ATTCGATTACATGATTTAGGCTTCGGACCTAAATTATCAATGGCGATTTATCAATTTTACCAATCCGAGACTTTAAATGT
GCTCGAAAATAACCCTTATCAACTCGTTTATGATATTAAAGGAATTGGTTTTAATAAAGCTGATACTTTAGCTAGAAATA
ATGGCATTAGTTTTAATGATCCAGAACGATTGAAAGCCGGATTATTATATACGCTAGAAGAAGAATGTATAAAACAAGGT
CACACCTATTTATCACTAGATTATGCCATTGAAGTGACATTAGACATGCTAATGGATGCTCATTCCAGTGATAGTATCGA
TTCAAAACAGCTTGAAAATATTCTCGAATTATTAAATGAGGAACAAAAAATTATTGTAAACAATGAGCGAGTCGCCATTC
CTAGTCTTTATTACTCCGAACTCAAAAGTGTTCAAAATTTATATCGAATTAAAACATACAAACATAAGCTAAAAGAAATA
GAACAATCTGATTTACAGATACATATAGGGGATATAGAGACTAGTAATAATGTACATTATGCACCATCTCAAAAAGAGGC
CTTACAAACTGCAATTAATTCTAAAATTATGCTTTTAACCGGTGGTCCTGGTACAGGTAAAACAACAGTAATCAAAGGAA
TCGTTGAGCTTTATGCAGAGGTACATGGTCTTTCTCTTAGTTACTCAGACTATCAAGAAGATGACTATCCTATTGTCCTT
GCAGCACCAACAGGTAGAGCATCTAAACGATTACAAGAATCTACAGGGTTGGAAGCAATGACAATTCATCGTCTAATTGG
ATGGAATCAAGAAACACAACCAGAAGACATTCTAGATAATGAAATTAAAGCAAAGCTCATAATTATTGACGAAATGTCGA
TGGTAGATACATGGTTGTTTCACCAATTTTTAAGTGCAGTTCCCCTAGATGCACAAATTATTTTAGTCGGTGATGAAGAT
CAATTACCTTCAGTTGGACCAGGTCAAATATTTAAGGATCTTATTGATTCGAAGGCAATACCTCGAGTTAATCTAACTGA
AGTTTATCGTCAACAAGATGGTTCAAGTATCATCGATTTAGCGCATCGTATGAAACACGGTGAGCCAATAGATATTACAA
AGCGTTTTCATGATAGGAGTTTTATAAGTTGTAATGTCGATCAAATTCCTAAAGTAGTTGAAAAAGTAGTTTCAAGTGCA
GTTAATAAGGGTTATGATATGAGTGATATTCAAGTCTTGGCGCCTATGTATAAGGGTAACGCAGGTATTAAAAGATTAAA
TCAAGTATTACAAGATATTTTAAACCCTAAGGCACAAGATACACGAGAAATTGAATTTGGTGATATAAAGTTTCGTAAAG
GTGATAAGGTTCTTCAGTTAGTTAATCGCCCTAATGATAATATCTTCAATGGTGACATAGGAATAATTGTTGGTATATTT
TGGGCTAAAGAAAATGCTTTAAATAAAGATGTTATGGTTGTTGATTTCGAAGGTAACGAGATTACTTTCACTCGTCAAGA
TTTATTAGAATTAACACATGCTTATTGCACATCTATTCATAAATCACAAGGATCTGAATTTCCTATTGTAATTATGCCTA
TCGTCAAGCAGTATTTTAGAATGTTACAGCGACCAATACTTTATACAGGACTTACACGTGCTAAACAATCATTAGTATTA
CTTGGAGATTCAACCGCATTTGAAATTGGATTAAATACGCAAGGACAATTACGACATACACAATTGCAAGAGCTAATCTT
GTCATATTTTGATATAGACCATAAACAAAGTGATGTAACAATTTCAAATACTGTGAGTAAAGATGAAGAGGCAATGAATA
CAATTCACGACGTTGATACTAAAGATGATCAAGTCATTTTAAGTGAATCTACGTTATATCAAATCAATCCAATGATTAAT
ATGGGGGATGTTTCTCCTTATGATTTTGTTGAGCGTTGA

Domains

Predicted by InterproScan.

• UvrD-like helicase C-terminal domain (UvrD_C_2) (673-721)

• ATP-dependent RecD-like DNA helicase SH3 domain (SH3_13) (586-656)

• AAA domain (AAA_30) (340-545)

• Helix-hairpin-helix containing domain (HHH_RecD2) (153-243)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
recD2	Bacillus subtilis subsp. subtilis str. 168	52.349	91.749	0.48