Detailed information    

insolico Bioinformatically predicted

Overview

Name   recJ   Type   Machinery gene
Locus tag   BCELL_RS07600 Genome accession   NC_014829
Coordinates   1700443..1702788 (+) Length   781 a.a.
NCBI ID   WP_013488106.1    Uniprot ID   -
Organism   Evansella cellulosilytica DSM 2522     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1695443..1707788
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BCELL_RS07580 (Bcell_1501) - 1695964..1696287 (+) 324 WP_013488101.1 post-transcriptional regulator -
  BCELL_RS22035 (Bcell_1502) secD 1696499..1697812 (+) 1314 WP_013488102.1 protein translocase subunit SecD -
  BCELL_RS22040 (Bcell_1503) secF 1697802..1698728 (+) 927 WP_013488103.1 protein translocase subunit SecF -
  BCELL_RS07590 (Bcell_1504) - 1699150..1700046 (+) 897 WP_041808732.1 cation diffusion facilitator family transporter -
  BCELL_RS07595 (Bcell_1505) - 1700051..1700380 (+) 330 WP_013488105.1 lipopolysaccharide assembly protein LapA domain-containing protein -
  BCELL_RS07600 (Bcell_1506) recJ 1700443..1702788 (+) 2346 WP_013488106.1 single-stranded-DNA-specific exonuclease RecJ Machinery gene
  BCELL_RS07605 (Bcell_1507) - 1702986..1703498 (+) 513 WP_013488107.1 adenine phosphoribosyltransferase -
  BCELL_RS07610 (Bcell_1508) - 1703790..1705970 (+) 2181 WP_013488108.1 bifunctional (p)ppGpp synthetase/guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase -
  BCELL_RS07615 (Bcell_1509) dtd 1705991..1706431 (+) 441 WP_013488109.1 D-aminoacyl-tRNA deacylase -
  BCELL_RS22895 (Bcell_1510) - 1706500..1706676 (+) 177 WP_013488110.1 hypothetical protein -

Sequence

Protein


Download         Length: 781 a.a.        Molecular weight: 87729.40 Da        Isoelectric Point: 4.8222

>NTDB_id=39226 BCELL_RS07600 WP_013488106.1 1700443..1702788(+) (recJ) [Evansella cellulosilytica DSM 2522]
MLQPKARWKITEANENQVMELANQLNISMIAARFLVQRGYDDVHKAQSFLHMDASMIHDPFLLKDMEKAVKRIHTAIKEN
ENILVFGDYDADGVTSTSLMYLTLKQLGANVGFYVPNRFTEGYGPNEQAFRHAKEENVSLIITVDTGIAANHEAEVAKEL
GVDLIITDHHEPPPTIPDAYAVINPKQDDCFYPNKNLAGVGVAFKVAHALLNRVPTEYIDLVAIGSIADLVPLIDENRFL
AAEGIHSLTREQRPGLKALMEHCNINPLELNEEHIGFMIGPRLNAAGRLDSADPAIQLLLSEDDIEAYELAIMIDDLNKE
RQTIVNEMAKEAEEQVLAKDTVPSVLIVGQAGWNAGVIGIVASRLVEKFYRPTIVLSLDESTGLAKGSARSIEGFDLFQA
LSQCREWLPHFGGHPMAAGLTMKIENINLLQEKMCNIAETTVAEENWIKSLAVDLPVKVSEVTTEAITHLQEMAPFGVGN
PAPKALIENVELAMTKKIGAKEDHLKLSLKDEESVLDGIAFRMGNIADELSPIAKLSVVGQLSINEWNGHVKPQMIIEDI
KVDEWQLFDLRSEKEPWTKINQQHSESIVVAAFRSESASLLSKIPAEWKTISFFEGEVDYSVFENKFVLLLDLPESFEQL
ESIFSVHDKPKRVYASFIHEKDHYFEMLPTREHFVWFYAFLKKRTTFDIEKHGADLAKHKGWSLNGLKFICSVFFDLGFV
KISNGFISIVDSPGKKELEESPTYKKRIEQSEIENVLLYSSFNELKSWIQNVMEKEVVTMS

Nucleotide


Download         Length: 2346 bp        

>NTDB_id=39226 BCELL_RS07600 WP_013488106.1 1700443..1702788(+) (recJ) [Evansella cellulosilytica DSM 2522]
ATGTTACAACCGAAGGCTAGATGGAAAATAACCGAAGCGAATGAAAATCAAGTGATGGAATTAGCGAATCAATTAAATAT
ATCGATGATTGCCGCAAGGTTTTTAGTTCAAAGGGGATATGATGATGTTCATAAAGCACAATCGTTCCTACATATGGACG
CATCAATGATACATGACCCCTTTTTATTAAAGGATATGGAAAAAGCAGTTAAGAGAATTCACACTGCAATTAAGGAAAAT
GAAAATATACTTGTTTTTGGTGATTACGATGCCGATGGGGTAACAAGTACTTCACTTATGTATTTGACGTTAAAACAATT
AGGAGCAAACGTTGGTTTTTACGTGCCAAATCGCTTTACCGAAGGATATGGTCCGAATGAGCAAGCGTTTAGACATGCAA
AAGAAGAGAATGTATCGTTAATTATTACTGTTGATACGGGAATAGCAGCGAACCATGAAGCCGAAGTCGCTAAAGAACTC
GGTGTAGATTTAATTATAACGGACCACCATGAACCACCACCAACGATTCCAGATGCATATGCAGTTATTAATCCAAAACA
GGACGATTGTTTTTATCCAAACAAGAATTTAGCTGGTGTTGGTGTGGCATTTAAGGTGGCACACGCATTATTAAATAGAG
TACCTACTGAATATATTGACTTAGTTGCGATCGGCTCTATAGCGGATCTTGTTCCTTTAATAGATGAAAATAGATTTCTT
GCAGCTGAAGGGATTCACTCTTTAACTAGAGAGCAACGTCCTGGCCTAAAGGCACTTATGGAGCATTGTAATATAAATCC
TTTAGAACTTAATGAAGAACATATTGGATTTATGATTGGCCCGCGTTTAAATGCAGCTGGGCGTTTAGACTCTGCAGATC
CAGCGATACAACTATTATTAAGTGAAGATGATATAGAGGCATATGAATTAGCCATTATGATTGATGATTTAAATAAGGAA
CGCCAAACAATTGTAAATGAGATGGCGAAGGAAGCGGAAGAACAAGTTTTAGCGAAGGACACGGTTCCCTCCGTTTTAAT
TGTTGGACAAGCAGGCTGGAACGCAGGTGTAATTGGTATTGTCGCTAGTAGATTAGTAGAAAAATTCTATCGTCCTACAA
TCGTATTAAGTCTCGATGAAAGCACAGGATTAGCGAAAGGATCTGCTCGTAGTATAGAAGGATTTGACCTGTTCCAAGCT
TTATCGCAGTGTCGCGAATGGTTACCTCATTTTGGGGGGCATCCAATGGCTGCTGGTTTAACAATGAAAATAGAAAATAT
TAACCTTCTTCAAGAAAAAATGTGCAACATTGCTGAAACAACAGTTGCTGAAGAAAACTGGATAAAGTCATTAGCTGTTG
ATTTGCCTGTAAAGGTGAGTGAGGTTACTACAGAAGCTATTACTCATTTACAGGAAATGGCTCCCTTTGGAGTCGGGAAT
CCTGCTCCTAAAGCTTTAATAGAAAATGTAGAGCTTGCAATGACAAAAAAAATTGGAGCAAAAGAGGATCATTTGAAGCT
ATCTTTAAAAGATGAAGAATCAGTGCTAGATGGAATTGCGTTTCGGATGGGGAATATTGCCGATGAACTTTCTCCAATAG
CAAAGCTATCGGTCGTTGGACAGCTATCAATCAATGAATGGAATGGACACGTTAAACCGCAAATGATTATAGAAGATATA
AAGGTAGATGAGTGGCAATTATTTGATTTGAGGAGTGAGAAAGAGCCTTGGACGAAGATTAACCAACAGCATAGTGAAAG
CATAGTGGTCGCAGCATTCAGAAGTGAATCAGCCTCACTATTATCTAAGATTCCGGCTGAGTGGAAGACGATTAGTTTCT
TTGAAGGTGAAGTTGACTATTCCGTATTTGAAAATAAGTTTGTCCTTTTACTAGATTTACCTGAGTCTTTCGAGCAATTA
GAGTCTATTTTTTCAGTGCACGATAAGCCAAAACGCGTATATGCAAGCTTTATACATGAAAAGGATCACTATTTTGAAAT
GCTACCTACGAGGGAACATTTCGTATGGTTTTATGCATTCTTAAAGAAGCGCACAACTTTTGATATTGAGAAGCACGGTG
CTGACCTTGCAAAACATAAAGGTTGGTCCTTAAACGGCTTAAAATTTATTTGTAGCGTGTTTTTTGATTTAGGATTTGTT
AAAATAAGCAATGGGTTTATATCAATTGTAGATTCACCAGGAAAAAAGGAATTGGAAGAATCACCAACGTATAAAAAGAG
AATAGAACAATCTGAAATTGAAAACGTATTGTTATATTCCTCTTTCAACGAATTAAAGTCTTGGATTCAAAATGTAATGG
AAAAAGAAGTAGTTACTATGAGCTAA

Domains

Predicted by InterproScan.

DHH family (DHH)

(82-225)

Single-strand DNA-specific exonuclease, C terminal domain (ssDNA-exonuc_C)

(566-769)

DHHA1 domain (DHHA1)

(315-434)

RecJ OB domain (RecJ_OB)

(453-559)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recJ Bacillus subtilis subsp. subtilis str. 168

48.972

99.616

0.488

Multiple sequence alignment