Detailed information    

insolico Bioinformatically predicted

Overview

Name   xcpW   Type   Machinery gene
Locus tag   GA646_RS08780 Genome accession   NZ_CP045127
Coordinates   1689962..1690597 (-) Length   211 a.a.
NCBI ID   WP_104489735.1    Uniprot ID   -
Organism   Acinetobacter indicus strain XG03     
Function   pseudopilus assembly (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1684962..1695597
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GA646_RS08750 - 1685347..1685778 (-) 432 WP_104473640.1 SRPBCC family protein -
  GA646_RS08755 tadA 1685836..1686357 (-) 522 WP_104484289.1 tRNA adenosine(34) deaminase TadA -
  GA646_RS08760 - 1686361..1687485 (-) 1125 WP_005177517.1 enoyl-CoA hydratase/isomerase family protein -
  GA646_RS08765 ung 1687482..1688195 (-) 714 WP_005177514.1 uracil-DNA glycosylase -
  GA646_RS08770 - 1688237..1688833 (-) 597 WP_005177512.1 6-pyruvoyl trahydropterin synthase family protein -
  GA646_RS08775 gspK 1688982..1689929 (-) 948 WP_104487765.1 type II secretion system minor pseudopilin GspK -
  GA646_RS08780 xcpW 1689962..1690597 (-) 636 WP_104489735.1 type II secretion system minor pseudopilin GspJ Machinery gene
  GA646_RS08785 xcpV 1690594..1690938 (-) 345 WP_242898261.1 type II secretion system protein Machinery gene
  GA646_RS08790 - 1691081..1691653 (-) 573 WP_075174514.1 prepilin-type N-terminal cleavage/methylation domain-containing protein -
  GA646_RS08795 - 1691659..1692273 (-) 615 WP_075166784.1 TetR/AcrR family transcriptional regulator -
  GA646_RS08800 - 1692334..1693107 (-) 774 WP_005177502.1 TatD family hydrolase -
  GA646_RS08805 - 1693137..1693478 (-) 342 WP_005177501.1 PilZ domain-containing protein -
  GA646_RS08810 - 1693490..1694473 (-) 984 WP_045795758.1 DNA polymerase III subunit delta' -
  GA646_RS08815 kdsB 1694482..1695246 (-) 765 WP_075174513.1 3-deoxy-manno-octulosonate cytidylyltransferase -

Sequence

Protein


Download         Length: 211 a.a.        Molecular weight: 24193.50 Da        Isoelectric Point: 6.4849

>NTDB_id=392092 GA646_RS08780 WP_104489735.1 1689962..1690597(-) (xcpW) [Acinetobacter indicus strain XG03]
MIKAKRGFTLVELLVAIAIFAVLSALGWKVFDYLVKVKDRNQWHEQQLEGLQSAYQQILRDSIQIVPLTANINNDIQPAL
VLQNGRFNFSKTGVTDPLQQGIAPTERIEYQYRADEQKLYRLKYANLHQSGQDQPVSSVLLDNVSQFQVSVLNPQELSNW
PDSSIDLNDDQQKRKLPKGIKINLTVQDIQYEWIFSLLNTDFLKSDNKTTS

Nucleotide


Download         Length: 636 bp        

>NTDB_id=392092 GA646_RS08780 WP_104489735.1 1689962..1690597(-) (xcpW) [Acinetobacter indicus strain XG03]
ATGATTAAGGCTAAACGCGGATTTACCTTGGTTGAACTGCTGGTGGCCATTGCCATCTTTGCGGTGCTGTCTGCCTTGGG
CTGGAAAGTATTTGATTATCTGGTCAAGGTCAAAGACCGTAACCAGTGGCATGAACAGCAGTTAGAAGGACTGCAGAGTG
CCTATCAACAAATCTTGCGTGACAGTATCCAGATTGTACCGCTGACCGCAAACATCAATAATGATATTCAGCCAGCTCTG
GTACTACAAAACGGCCGTTTTAATTTTAGCAAGACCGGTGTGACCGATCCTTTGCAGCAGGGCATTGCGCCCACTGAACG
GATTGAATATCAATACCGGGCCGATGAACAAAAACTGTATCGTCTGAAATATGCCAATTTGCATCAGTCCGGGCAGGATC
AGCCGGTTTCCAGTGTATTGTTGGACAATGTTAGCCAGTTTCAGGTCAGTGTGCTGAATCCGCAAGAGCTGAGTAACTGG
CCAGACAGCAGTATTGATTTAAATGATGATCAGCAAAAACGCAAACTGCCAAAAGGCATTAAAATAAATTTAACCGTACA
AGATATACAATATGAATGGATTTTTAGCCTGTTAAATACTGACTTCCTGAAATCAGACAATAAAACCACATCATAA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(3-26)

Type II secretion system (T2SS), protein J (T2SSJ)

(60-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  xcpW Acinetobacter baumannii D1279779

61.224

92.891

0.569

Multiple sequence alignment