Detailed information    

insolico Bioinformatically predicted

Overview

Name   comB3   Type   Machinery gene
Locus tag   HK440_RS05625 Genome accession   NZ_CP053396
Coordinates   1201034..1201294 (+) Length   86 a.a.
NCBI ID   WP_000602756.1    Uniprot ID   -
Organism   Helicobacter pylori strain HPY     
Function   transformation-associated type IV transport system (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1196034..1206294
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HK440_RS05600 - 1196798..1197037 (+) 240 Protein_1099 hypothetical protein -
  HK440_RS05605 (HK440_05575) - 1197121..1197774 (+) 654 WP_025449289.1 IS607 family transposase -
  HK440_RS05610 (HK440_05580) - 1197749..1199008 (+) 1260 WP_001917699.1 RNA-guided endonuclease TnpB family protein -
  HK440_RS08145 - 1199059..1200741 (+) 1683 Protein_1102 toprim domain-containing protein -
  HK440_RS05620 (HK440_05590) - 1200731..1201033 (+) 303 WP_000649842.1 TrbC/VirB2 family protein -
  HK440_RS05625 (HK440_05595) comB3 1201034..1201294 (+) 261 WP_000602756.1 hypothetical protein Machinery gene
  HK440_RS05630 (HK440_05600) - 1201307..1203805 (+) 2499 WP_001917633.1 VirB4 family type IV secretion system protein -
  HK440_RS05635 (HK440_05605) - 1203798..1205732 (+) 1935 WP_025449283.1 type IA DNA topoisomerase -
  HK440_RS08220 - 1205732..1205860 (+) 129 WP_001917631.1 hypothetical protein -

Sequence

Protein


Download         Length: 86 a.a.        Molecular weight: 10154.04 Da        Isoelectric Point: 4.6082

>NTDB_id=392032 HK440_RS05625 WP_000602756.1 1201034..1201294(+) (comB3) [Helicobacter pylori strain HPY]
MILNYVETINVREISKKEKFLKLNMNSWIISFLSASFLFVWSLLYGVVLLVALITMFYILEFFDEDITNIILANLTLKND
TKEYYA

Nucleotide


Download         Length: 261 bp        

>NTDB_id=392032 HK440_RS05625 WP_000602756.1 1201034..1201294(+) (comB3) [Helicobacter pylori strain HPY]
ATGATTTTAAATTATGTAGAGACCATCAATGTTAGAGAAATATCTAAAAAAGAGAAGTTTTTAAAGCTTAATATGAATAG
TTGGATCATTTCTTTTTTGAGTGCTTCTTTCTTATTTGTGTGGTCTTTATTATATGGCGTGGTGCTATTGGTGGCATTAA
TAACAATGTTTTACATACTAGAATTTTTTGATGAAGATATTACAAACATTATTTTGGCAAACCTAACGCTAAAAAATGAC
ACTAAAGAATATTATGCTTAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comB3 Helicobacter pylori 26695

44.828

100

0.453