Detailed information    

insolico Bioinformatically predicted

Overview


Name   pilV   Type   Machinery gene
Locus tag   FQU82_RS17610 Genome accession   NZ_CP045110
Coordinates   3655932..3656492 (-) Length   186 a.a.
NCBI ID   WP_002194578.1    Uniprot ID   -
Organism   Acinetobacter baumannii strain ATCC 19606     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context


Location: 3650932..3661492
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FQU82_RS17600 (FQU82_03486) pilX 3654115..3654933 (-) 819 WP_000149377.1 PilX N-terminal domain-containing pilus assembly protein Machinery gene
  FQU82_RS17605 (FQU82_03487) pilW 3654930..3655931 (-) 1002 WP_000079195.1 PilW family protein Machinery gene
  FQU82_RS17610 (FQU82_03488) pilV 3655932..3656492 (-) 561 WP_002194578.1 type IV pilus modification protein PilV Machinery gene
  FQU82_RS17615 (FQU82_03489) fimU 3656486..3656959 (-) 474 WP_001214059.1 pilus assembly FimT family protein Machinery gene
  FQU82_RS17620 (FQU82_03490) ispH 3657129..3658079 (-) 951 WP_000407064.1 4-hydroxy-3-methylbut-2-enyl diphosphate reductase -
  FQU82_RS17625 (FQU82_03491) gmk 3658202..3658831 (+) 630 WP_000015937.1 guanylate kinase -
  FQU82_RS17630 (FQU82_03492) rpoZ 3658904..3659182 (+) 279 WP_000135049.1 DNA-directed RNA polymerase subunit omega -
  FQU82_RS17635 - 3659221..3659351 (+) 131 Protein_3425 hypothetical protein -

Sequence


Protein


Download         Length: 186 a.a.        Molecular weight: 20162.12 Da        Isoelectric Point: 8.2247

>NTDB_id=392010 FQU82_RS17610 WP_002194578.1 3655932..3656492(-) (pilV) [Acinetobacter baumannii strain ATCC 19606]
MLMHHYKQKAQAGVGLLEVLVALILLAIGVLGYVALQLRAMDASSEALSKSQAILVMRGLAENIRTNSTQASQYPTFVRS
YSNYTSDTPAPTSCFNSLCTASQLAQFDAYQAARNANQLGMRITMSNCPGVTNTMVQQRQCLFVFWGKTAPVITTNGTNT
SVDVSSCMSNNGVYVNNSTCLMMEAY

Nucleotide


Download         Length: 561 bp        

>NTDB_id=392010 FQU82_RS17610 WP_002194578.1 3655932..3656492(-) (pilV) [Acinetobacter baumannii strain ATCC 19606]
TTGTTAATGCATCACTATAAGCAAAAAGCCCAAGCTGGGGTGGGCTTACTCGAAGTTTTGGTTGCCTTAATTTTACTTGC
TATTGGAGTTTTAGGTTATGTTGCCTTGCAGCTAAGAGCTATGGATGCATCTTCAGAAGCATTAAGTAAATCTCAAGCCA
TTCTAGTGATGAGGGGATTAGCAGAAAATATCCGTACAAATAGTACTCAAGCTAGCCAGTATCCTACATTTGTGCGTAGT
TATAGCAACTATACATCTGATACTCCTGCACCCACGTCATGTTTTAACTCTCTATGTACTGCCTCCCAACTTGCTCAATT
TGATGCCTATCAAGCAGCTAGAAATGCTAATCAACTGGGTATGAGAATTACGATGTCAAATTGCCCTGGCGTTACAAATA
CAATGGTGCAACAACGCCAGTGCCTATTTGTCTTTTGGGGTAAAACTGCGCCAGTGATTACTACAAATGGAACAAATACT
AGTGTGGATGTTTCAAGTTGTATGAGTAATAACGGTGTTTACGTGAATAATTCAACTTGCTTAATGATGGAGGCATATTA
A


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilV Acinetobacter baumannii D1279779

100

100

1

  pilV Acinetobacter baylyi ADP1

41.398

100

0.414


Multiple sequence alignment