Detailed information
Bioinformatically predicted
Overview
| Name | comB3 | Type | Machinery gene |
| Locus tag | HK440_RS00405 | Genome accession | NZ_CP053396 |
| Coordinates | 89976..90239 (+) | Length | 87 a.a. |
| NCBI ID | WP_001177712.1 | Uniprot ID | - |
| Organism | Helicobacter pylori strain HPY | ||
| Function | transformation-associated type IV transport system (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 84976..95239
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| HK440_RS00370 (HK440_00370) | - | 85064..85405 (+) | 342 | WP_001917068.1 | hypothetical protein | - |
| HK440_RS00375 (HK440_00375) | - | 85415..86326 (+) | 912 | WP_001917067.1 | LPP20 family lipoprotein | - |
| HK440_RS00380 (HK440_00380) | - | 86676..87833 (-) | 1158 | WP_171407230.1 | restriction endonuclease subunit S | - |
| HK440_RS00385 (HK440_00385) | - | 87842..88269 (-) | 428 | Protein_75 | restriction endonuclease subunit M | - |
| HK440_RS00390 (HK440_00390) | - | 88313..89101 (+) | 789 | WP_001917655.1 | hypothetical protein | - |
| HK440_RS00395 (HK440_00395) | - | 89205..89684 (+) | 480 | WP_000571125.1 | hypothetical protein | - |
| HK440_RS00400 (HK440_00400) | comB2 | 89681..89965 (+) | 285 | WP_000736478.1 | TrbC/VirB2 family protein | Machinery gene |
| HK440_RS00405 (HK440_00405) | comB3 | 89976..90239 (+) | 264 | WP_001177712.1 | hypothetical protein | Machinery gene |
| HK440_RS00410 (HK440_00410) | - | 90250..90486 (+) | 237 | WP_001917654.1 | hypothetical protein | - |
| HK440_RS00415 (HK440_00415) | - | 90486..93067 (+) | 2582 | Protein_81 | VirB4 family type IV secretion/conjugal transfer ATPase | - |
| HK440_RS00420 (HK440_00420) | - | 93064..93198 (+) | 135 | WP_000738749.1 | hypothetical protein | - |
| HK440_RS00425 (HK440_00425) | - | 93191..94360 (+) | 1170 | WP_001917653.1 | VirB8/TrbF family protein | - |
Sequence
Protein
Download Length: 87 a.a. Molecular weight: 10002.89 Da Isoelectric Point: 5.7206
>NTDB_id=392000 HK440_RS00405 WP_001177712.1 89976..90239(+) (comB3) [Helicobacter pylori strain HPY]
MQLVGISVSNLKEISSKEKFLWLNAKSFLIAGFIPFVMIPWLDFLNSLMLYVCFLLVFSIAEFFDEDISDILIAHSKIKT
KTNSFYA
MQLVGISVSNLKEISSKEKFLWLNAKSFLIAGFIPFVMIPWLDFLNSLMLYVCFLLVFSIAEFFDEDISDILIAHSKIKT
KTNSFYA
Nucleotide
Download Length: 264 bp
>NTDB_id=392000 HK440_RS00405 WP_001177712.1 89976..90239(+) (comB3) [Helicobacter pylori strain HPY]
ATGCAATTAGTCGGCATTTCAGTTTCTAATCTCAAAGAAATCAGTTCTAAAGAAAAGTTTCTTTGGCTCAATGCTAAGAG
CTTTTTAATCGCAGGATTTATTCCTTTTGTAATGATACCTTGGCTAGATTTTTTAAATTCTTTAATGCTGTATGTGTGCT
TTTTATTGGTTTTTAGCATAGCGGAGTTCTTTGATGAAGATATAAGCGACATTTTAATCGCCCATTCTAAGATTAAAACC
AAAACTAATTCATTTTATGCTTAA
ATGCAATTAGTCGGCATTTCAGTTTCTAATCTCAAAGAAATCAGTTCTAAAGAAAAGTTTCTTTGGCTCAATGCTAAGAG
CTTTTTAATCGCAGGATTTATTCCTTTTGTAATGATACCTTGGCTAGATTTTTTAAATTCTTTAATGCTGTATGTGTGCT
TTTTATTGGTTTTTAGCATAGCGGAGTTCTTTGATGAAGATATAAGCGACATTTTAATCGCCCATTCTAAGATTAAAACC
AAAACTAATTCATTTTATGCTTAA
Domains
No domain identified.
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| comB3 | Helicobacter pylori 26695 |
59.77 |
100 |
0.598 |