Detailed information    

insolico Bioinformatically predicted

Overview

Name   comF   Type   Machinery gene
Locus tag   GBN93_RS16330 Genome accession   NZ_CP045103
Coordinates   3388598..3389038 (-) Length   146 a.a.
NCBI ID   WP_234964915.1    Uniprot ID   -
Organism   Acinetobacter johnsonii strain AJ413     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3383598..3394038
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GBN93_RS16300 (GBN93_16355) - 3384172..3385137 (+) 966 WP_234964913.1 esterase/lipase family protein -
  GBN93_RS16305 (GBN93_16360) - 3385311..3386282 (+) 972 WP_234964914.1 esterase/lipase family protein -
  GBN93_RS16310 (GBN93_16365) rplS 3386342..3386716 (-) 375 WP_004691454.1 50S ribosomal protein L19 -
  GBN93_RS16315 (GBN93_16370) trmD 3386856..3387596 (-) 741 WP_094148539.1 tRNA (guanosine(37)-N1)-methyltransferase TrmD -
  GBN93_RS16320 (GBN93_16375) rimM 3387624..3388172 (-) 549 WP_168158650.1 ribosome maturation factor RimM -
  GBN93_RS16325 (GBN93_16380) rpsP 3388201..3388458 (-) 258 WP_004718284.1 30S ribosomal protein S16 -
  GBN93_RS16330 (GBN93_16385) comF 3388598..3389038 (-) 441 WP_234964915.1 type IV pilin protein Machinery gene
  GBN93_RS16335 (GBN93_16390) - 3389025..3389549 (-) 525 WP_234964916.1 type IV pilin protein -
  GBN93_RS16340 (GBN93_16395) - 3389559..3393431 (-) 3873 WP_234964917.1 PilC/PilY family type IV pilus protein -

Sequence

Protein


Download         Length: 146 a.a.        Molecular weight: 16140.99 Da        Isoelectric Point: 4.6027

>NTDB_id=391965 GBN93_RS16330 WP_234964915.1 3388598..3389038(-) (comF) [Acinetobacter johnsonii strain AJ413]
MRNGNYTGFTLIELMIVVAIIAILAAIAYPSYTSYRVKTNRVDVQTQMMNIAQRLQSYKSVNHSYTGATLASLGISSTYP
SSGEYNLDLKIDGDNQGYLLKAQPNSSTIQESNGEICLNQEGFKFWEKGSDCDADDLTNQSSWDGK

Nucleotide


Download         Length: 441 bp        

>NTDB_id=391965 GBN93_RS16330 WP_234964915.1 3388598..3389038(-) (comF) [Acinetobacter johnsonii strain AJ413]
ATGAGAAATGGTAACTATACTGGCTTCACATTAATTGAACTCATGATTGTTGTTGCGATTATTGCAATTCTAGCTGCTAT
AGCTTATCCATCTTATACATCTTATAGGGTGAAGACCAATCGTGTGGATGTTCAAACCCAAATGATGAATATTGCCCAAC
GTTTACAGAGTTATAAATCCGTAAATCATAGTTATACTGGAGCAACTTTAGCAAGTCTTGGTATTTCATCTACCTATCCA
TCCAGCGGTGAATATAATTTAGATTTAAAGATTGATGGGGACAACCAAGGGTATTTATTAAAAGCGCAGCCAAATAGTTC
GACAATTCAAGAAAGCAATGGTGAAATCTGTTTAAATCAAGAAGGGTTTAAATTCTGGGAGAAAGGCAGTGATTGTGATG
CTGACGATTTAACGAACCAATCCTCTTGGGACGGCAAATAA

Domains

Predicted by InterproScan.

Type IV minor pilin ComP, DNA uptake sequence receptor (ComP_DUS)

(30-117)

Prokaryotic N-terminal methylation motif (N_methyl)

(5-29)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comF Acinetobacter baylyi ADP1

58.156

96.575

0.562
  pilE Acinetobacter baumannii D1279779

50.714

95.89

0.486

Multiple sequence alignment