Detailed information NTG0391864

Bioinformatically predicted

Overview

• Name: rarA
• Type: Machinery gene
• Locus tag: HNO12_RS12735
• Genome accession: NZ_CP053376
• Coordinates: 2658402..2659670 (+)
• Length: 422 a.a.
• NCBI ID: WP_024085648.1
• Uniprot ID: -
• Organism: Bacillus amyloliquefaciens strain WF02
• Function: homologous recombination (predicted from homology) Homologous recombination

Genomic Context

Location: 2653402..2664670

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
HNO12_RS12715 (HNO12_12755)	-	2654773..2655423 (-)	651	WP_003152733.1	tetratricopeptide repeat protein	-
HNO12_RS12720 (HNO12_12760)	mnmA	2655481..2656596 (-)	1116	WP_024085647.1	tRNA 2-thiouridine(34) synthase MnmA	-
HNO12_RS12725 (HNO12_12765)	-	2656633..2657772 (-)	1140	WP_003152731.1	cysteine desulfurase family protein	-
HNO12_RS12730 (HNO12_12770)	cymR	2657791..2658207 (-)	417	WP_003152730.1	cysteine metabolism transcriptional regulator CymR	-
HNO12_RS12735 (HNO12_12775)	rarA	2658402..2659670 (+)	1269	WP_024085648.1	replication-associated recombination protein A	Machinery gene
HNO12_RS12740 (HNO12_12780)	-	2659746..2660510 (-)	765	WP_003152728.1	ThiF family adenylyltransferase	-
HNO12_RS12750 (HNO12_12790)	aspS	2660837..2662615 (-)	1779	WP_024085649.1	aspartate--tRNA ligase	-
HNO12_RS12755 (HNO12_12795)	hisS	2662630..2663904 (-)	1275	WP_003152726.1	histidine--tRNA ligase	-
HNO12_RS12760 (HNO12_12800)	-	2664261..2664431 (-)	171	WP_003152722.1	YrzK family protein	-

Sequence

Protein

• Length: 422 a.a.
• Molecular weight: 46700.64 Da
• Isoelectric Point: 8.5461

>NTDB_id=391864 HNO12_RS12735 WP_024085648.1 2658402..2659670(+) (rarA) [Bacillus amyloliquefaciens strain WF02]
MKPLAYRMRPANIEDIIGQEHLVKEDKIIGRMVRAKHLSSMILYGPPGIGKTSIATAIAGSTSIAFRKLNAVIHNKKDME
IVVQEAKMSGQVILILDEVHRLDKGKQDFLLPYLENGMIILIGATTANPYHAINPAIRSRTQIFELEPLTPDLIRQALKR
ALTDEHRGLGSYSVSVDDDAMDHFAQGCGGDVRSALNALELAVLSTKESSDGTIRIIRETAEECLQKKSYTHDKNGDAHY
DVLSAFQKSIRGSDANAALHYLARLIEAGDLESISRRLLVIAYEDIGLASPQAGPRVLSAIQTAERIGFPEARIPLANAV
IELCLSPKSNSAISAVDEALKDIRTGKIGDVPKHLKDAHYKGAQELGRGIGYQYPHDFENGWVEQQYLPDPLKNKQYYKP
KQTGKFEAAIKQVYEKLMKQKK

Nucleotide

• Length: 1269 bp

>NTDB_id=391864 HNO12_RS12735 WP_024085648.1 2658402..2659670(+) (rarA) [Bacillus amyloliquefaciens strain WF02]
ATGAAACCATTGGCGTATCGGATGCGGCCTGCCAATATCGAAGACATTATCGGTCAGGAACATTTGGTCAAAGAAGATAA
AATCATCGGCAGAATGGTGCGTGCGAAGCACTTATCATCCATGATCCTGTACGGACCGCCGGGCATCGGAAAAACGTCCA
TCGCCACAGCGATCGCAGGATCGACAAGCATCGCATTCAGGAAATTGAATGCCGTCATTCATAATAAAAAAGACATGGAG
ATTGTCGTACAGGAAGCGAAAATGTCAGGCCAGGTCATTTTAATCCTTGATGAAGTGCACAGACTTGATAAGGGAAAGCA
GGATTTTCTGCTGCCCTATTTAGAAAACGGCATGATTATTTTAATCGGCGCGACGACCGCCAATCCTTATCATGCCATTA
ACCCGGCCATCAGAAGCCGGACCCAGATATTTGAGCTTGAACCGTTAACACCCGATCTGATCAGGCAGGCATTGAAAAGA
GCGCTCACAGATGAACACCGGGGACTCGGTTCCTACAGCGTTTCGGTGGACGACGACGCGATGGATCATTTCGCACAAGG
GTGCGGAGGAGACGTCCGCTCCGCTTTGAACGCACTGGAGCTTGCCGTGCTCTCCACAAAGGAATCAAGCGACGGCACGA
TCCGAATTATACGGGAAACGGCGGAAGAATGTCTGCAGAAAAAAAGCTATACCCATGATAAAAACGGCGATGCGCATTAT
GACGTCTTATCCGCGTTCCAAAAATCGATCCGGGGCTCGGACGCAAACGCCGCCCTTCATTATTTGGCCCGTCTGATCGA
AGCCGGAGACCTTGAAAGCATATCAAGAAGGCTTCTCGTGATCGCCTATGAAGATATCGGCCTCGCAAGCCCGCAGGCAG
GCCCCCGGGTGCTGAGCGCGATTCAGACCGCAGAACGGATCGGCTTTCCGGAAGCAAGAATTCCGCTGGCCAATGCGGTA
ATCGAATTATGCCTCTCGCCGAAATCAAACTCCGCCATTTCAGCCGTTGATGAGGCGCTCAAAGACATCAGGACGGGTAA
AATCGGCGATGTGCCGAAACATTTAAAAGACGCCCACTATAAAGGGGCCCAAGAGCTCGGACGCGGGATCGGCTATCAAT
ATCCCCACGATTTCGAGAACGGATGGGTCGAACAGCAATATTTGCCCGATCCGTTAAAAAACAAGCAATACTATAAACCG
AAACAAACGGGGAAATTTGAAGCCGCCATAAAGCAAGTGTATGAAAAACTGATGAAGCAGAAAAAATAA

Domains

Predicted by InterProScan.

• Holliday junction DNA helicase RuvB P-loop domain (RuvB_N) (8-125)

• AAA C-terminal domain (AAA_assoc_2) (172-251)

• MgsA AAA+ ATPase C terminal (MgsA_C) (252-417)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rarA	Bacillus subtilis subsp. subtilis str. 168	90.499	99.763	0.903