Detailed information    

insolico Bioinformatically predicted

Overview

Name   ceuB   Type   Machinery gene
Locus tag   F1716_RS07935 Genome accession   NZ_CP045048
Coordinates   1455537..1456505 (+) Length   322 a.a.
NCBI ID   WP_063668012.1    Uniprot ID   -
Organism   Campylobacter jejuni subsp. jejuni strain NADC 20827     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1450537..1461505
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  F1716_RS07910 (F1716_07965) cdsA 1451448..1452173 (-) 726 WP_002875269.1 phosphatidate cytidylyltransferase -
  F1716_RS07915 (F1716_07970) - 1452182..1452520 (-) 339 WP_002852397.1 hypothetical protein -
  F1716_RS07920 (F1716_07975) - 1452522..1453829 (-) 1308 WP_002864240.1 NFACT family protein -
  F1716_RS07925 (F1716_07980) mobA 1453891..1454466 (+) 576 WP_002867312.1 molybdenum cofactor guanylyltransferase -
  F1716_RS07930 (F1716_07985) pldA 1454463..1455451 (+) 989 Protein_1505 phospholipase A -
  F1716_RS07935 (F1716_07990) ceuB 1455537..1456505 (+) 969 WP_063668012.1 ABC transporter permease Machinery gene
  F1716_RS07940 (F1716_07995) ceuC 1456498..1457436 (+) 939 WP_002867309.1 iron chelate uptake ABC transporter family permease subunit -
  F1716_RS07945 (F1716_08000) ceuD 1457433..1458188 (+) 756 WP_002896069.1 ABC transporter ATP-binding protein -
  F1716_RS07950 (F1716_08005) ceuB 1458201..1459193 (+) 993 WP_002867307.1 enterochelin ABC transporter substrate-binding protein CeuB -
  F1716_RS07960 (F1716_08015) - 1459419..1459973 (-) 555 WP_043012925.1 membrane protein -

Sequence

Protein


Download         Length: 322 a.a.        Molecular weight: 35481.45 Da        Isoelectric Point: 9.6678

>NTDB_id=391504 F1716_RS07935 WP_063668012.1 1455537..1456505(+) (ceuB) [Campylobacter jejuni subsp. jejuni strain NADC 20827]
MFFKHILSLKVLIALLLFFGMISLFIGVISINVKDILNLNSTQLEIITLTRIPRLIAILLTGMSLSICGLIMQQLTQNKF
VSPTTAGTMDCAKFGILISLIFFTGASFFIQAIIASIFALLGSFIFIQILRKIKLKDVIFVPLIGLMFGGIISAITTFFA
YALNYIQNIQGWLQGSMANVMQGNYELLYISLPLFILAYFLAHKITIVGMGEDIALNLGISYNGILFLGLMIVSIITSLV
IVSVGIIPFLGLIIPNLVALYLGDNLRKNLIYIALCGALFLLVCDIISRLVIFPFEMPLSITTGVLGSLIFIFLLLKRKV
YA

Nucleotide


Download         Length: 969 bp        

>NTDB_id=391504 F1716_RS07935 WP_063668012.1 1455537..1456505(+) (ceuB) [Campylobacter jejuni subsp. jejuni strain NADC 20827]
TTGTTTTTTAAGCATATATTGAGTTTAAAAGTGCTTATAGCTTTACTTTTATTCTTTGGAATGATAAGTTTATTTATAGG
AGTTATCAGTATCAATGTAAAAGATATCCTTAATCTTAACTCCACTCAACTAGAAATCATAACCCTTACAAGAATTCCTA
GACTTATAGCGATTTTACTCACAGGAATGAGTCTTAGTATATGCGGGCTTATCATGCAACAACTCACGCAAAATAAATTC
GTTTCTCCAACTACGGCAGGAACTATGGATTGTGCTAAATTTGGCATACTTATTTCTTTAATATTTTTTACTGGAGCATC
TTTTTTCATTCAAGCTATCATTGCTTCTATATTTGCACTTTTGGGTTCTTTTATATTTATCCAAATTTTAAGAAAAATCA
AACTCAAAGATGTGATTTTTGTACCTTTGATAGGCTTGATGTTTGGAGGCATTATTAGTGCTATAACCACTTTTTTTGCC
TATGCTTTAAATTATATACAAAATATCCAAGGCTGGCTACAAGGCAGTATGGCAAATGTTATGCAGGGAAATTATGAATT
ACTTTACATTTCTTTGCCACTTTTTATACTTGCTTATTTTTTAGCTCACAAAATCACCATAGTTGGCATGGGTGAAGATA
TAGCTTTAAATCTTGGAATTTCTTATAATGGGATATTATTTTTAGGCTTGATGATTGTAAGCATTATCACTAGTTTAGTG
ATTGTAAGCGTTGGGATTATCCCTTTTTTAGGGCTAATTATCCCAAATTTAGTAGCTCTTTATCTAGGTGATAATCTTAG
AAAAAATCTTATCTATATAGCACTTTGTGGAGCTTTGTTTTTACTTGTTTGCGATATCATTTCAAGACTTGTCATCTTTC
CTTTTGAAATGCCTTTAAGCATCACTACAGGTGTTTTAGGATCTTTAATCTTTATCTTTCTTTTGCTAAAAAGGAAAGTT
TATGCGTAA

Domains

Predicted by InterproScan.

FecCD transport family (FecCD)

(15-317)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ceuB Campylobacter jejuni subsp. jejuni 81-176

98.758

100

0.988

Multiple sequence alignment