Detailed information    

insolico Bioinformatically predicted

Overview

Name   sigH   Type   Regulator
Locus tag   LG542_RS07535 Genome accession   NZ_CP045007
Coordinates   1523591..1524157 (-) Length   188 a.a.
NCBI ID   WP_057907439.1    Uniprot ID   A0AA89I3R0
Organism   Latilactobacillus graminis strain LG542     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 1518591..1529157
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LG542_RS07515 (LG542_07520) - 1518701..1519348 (-) 648 WP_057907442.1 redox-sensing transcriptional repressor Rex -
  LG542_RS07520 (LG542_07525) - 1519540..1521480 (+) 1941 WP_057907441.1 ABC-F family ATP-binding cassette domain-containing protein -
  LG542_RS07525 (LG542_07530) - 1521696..1522013 (-) 318 WP_151886762.1 PTS sugar transporter subunit IIB -
  LG542_RS07530 (LG542_07535) - 1522285..1523544 (+) 1260 WP_226789463.1 chloride channel protein -
  LG542_RS07535 (LG542_07540) sigH 1523591..1524157 (-) 567 WP_057907439.1 sigma-70 family RNA polymerase sigma factor Regulator
  LG542_RS07540 (LG542_07545) - 1524233..1524766 (-) 534 WP_057907438.1 NYN domain-containing protein -
  LG542_RS07545 (LG542_07550) rlmB 1524770..1525549 (-) 780 WP_057907511.1 23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB -
  LG542_RS07550 (LG542_07555) - 1525632..1526039 (-) 408 WP_057907437.1 Mini-ribonuclease 3 -
  LG542_RS07555 (LG542_07560) cysS 1526036..1527442 (-) 1407 WP_057907436.1 cysteine--tRNA ligase -
  LG542_RS07560 (LG542_07565) - 1527811..1528923 (-) 1113 WP_057907435.1 PIN/TRAM domain-containing protein -

Sequence

Protein


Download         Length: 188 a.a.        Molecular weight: 21846.93 Da        Isoelectric Point: 5.7408

>NTDB_id=391213 LG542_RS07535 WP_057907439.1 1523591..1524157(-) (sigH) [Latilactobacillus graminis strain LG542]
MESAKRDAKLIQAVVENDSEALDILFKAYLPMVYRTFTPYYIRLFDEDDWLQEARIVCYETCQCYDQNSGKSFGGFYKLR
FHHHVLNLIRKELAQKRRIDQQSLLTDCCPEGSAVGEDTVAYYQSAVEMRAYLETLSAFELVAFRVLAGQLVLEQACSQF
DCTLEQMKRAQSRCQTKLKQFYANQQVP

Nucleotide


Download         Length: 567 bp        

>NTDB_id=391213 LG542_RS07535 WP_057907439.1 1523591..1524157(-) (sigH) [Latilactobacillus graminis strain LG542]
ATGGAATCAGCAAAACGTGATGCAAAATTAATTCAAGCGGTGGTTGAAAATGATTCTGAGGCCTTGGATATTTTATTTAA
GGCCTACCTACCGATGGTTTATCGCACCTTTACCCCATATTATATTCGCTTGTTTGATGAAGACGATTGGTTACAGGAAG
CACGGATTGTCTGTTATGAGACGTGTCAATGCTATGATCAAAATAGCGGGAAGAGCTTTGGTGGTTTTTATAAACTACGG
TTTCACCACCATGTATTAAACCTTATCCGTAAGGAGCTCGCACAAAAACGGCGAATCGATCAACAGTCTTTATTGACGGA
TTGCTGCCCAGAAGGGAGTGCAGTGGGTGAAGATACCGTTGCTTATTATCAGTCAGCTGTTGAAATGCGAGCTTACTTAG
AAACCCTATCGGCATTTGAATTGGTTGCCTTTCGCGTTTTGGCTGGGCAACTGGTACTTGAACAAGCGTGCAGTCAGTTT
GATTGTACATTGGAACAGATGAAACGAGCGCAATCACGCTGTCAGACAAAACTGAAACAATTTTATGCTAATCAACAAGT
GCCTTAA

Domains

Predicted by InterproScan.

Sigma-70 region 2 (Sigma70_r2)

(25-92)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sigH Latilactobacillus sakei subsp. sakei 23K

70.879

96.809

0.686

Multiple sequence alignment