Detailed information    

insolico Bioinformatically predicted

Overview

Name   recR   Type   Machinery gene
Locus tag   NMBNZ0533_RS06800 Genome accession   NC_017518
Coordinates   1240065..1240682 (-) Length   205 a.a.
NCBI ID   WP_002223752.1    Uniprot ID   -
Organism   Neisseria meningitidis NZ-05/33     
Function   promote later steps in plasmid transformation (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1235065..1245682
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NMBNZ0533_RS06780 (NMBNZ0533_1199) recD 1235778..1237523 (-) 1746 WP_014581068.1 exodeoxyribonuclease V subunit alpha Machinery gene
  NMBNZ0533_RS06785 (NMBNZ0533_1200) lolD 1237591..1238286 (-) 696 WP_002223754.1 lipoprotein-releasing ABC transporter ATP-binding protein LolD -
  NMBNZ0533_RS06790 (NMBNZ0533_1201) - 1238279..1239526 (-) 1248 WP_002223753.1 lipoprotein-releasing ABC transporter permease subunit -
  NMBNZ0533_RS06795 (NMBNZ0533_1202) - 1239731..1240009 (+) 279 WP_002213502.1 hypothetical protein -
  NMBNZ0533_RS06800 (NMBNZ0533_1203) recR 1240065..1240682 (-) 618 WP_002223752.1 recombination mediator RecR Machinery gene
  NMBNZ0533_RS06805 (NMBNZ0533_1204) - 1240749..1242287 (-) 1539 WP_002223751.1 SurA N-terminal domain-containing protein -
  NMBNZ0533_RS06810 (NMBNZ0533_1205) - 1242341..1242715 (-) 375 WP_002223750.1 arsenate reductase -
  NMBNZ0533_RS06815 (NMBNZ0533_1206) - 1242865..1244493 (+) 1629 WP_014582436.1 ABC-F family ATPase -

Sequence

Protein


Download         Length: 205 a.a.        Molecular weight: 22360.76 Da        Isoelectric Point: 6.3742

>NTDB_id=39117 NMBNZ0533_RS06800 WP_002223752.1 1240065..1240682(-) (recR) [Neisseria meningitidis NZ-05/33]
MSHKKQDAFQGLIDALKVLPNVGPKSAQRIAYHLLQHKRKEAEKLVDALQTALKQVHHCAMCNTFCEGGLCDICADETRD
GRRLMVVHMPADVSNMEVANCHDGLYFVLMGQINTALGMDVSAIALDRLAQRLGGGEVEEIIIATAFTAEGNATAYVLSE
FFKNLPYKVSRLSQGIPLGGELEYVDAGTLAQAVYERRLIKEGGA

Nucleotide


Download         Length: 618 bp        

>NTDB_id=39117 NMBNZ0533_RS06800 WP_002223752.1 1240065..1240682(-) (recR) [Neisseria meningitidis NZ-05/33]
ATGAGCCACAAAAAACAAGATGCCTTCCAAGGATTGATCGACGCGCTGAAGGTTTTACCCAACGTCGGGCCGAAATCGGC
ACAGCGGATAGCGTATCATTTGCTCCAACACAAGCGCAAAGAGGCTGAAAAACTGGTGGATGCCTTGCAGACGGCATTGA
AGCAGGTTCACCATTGCGCGATGTGCAACACGTTTTGCGAAGGCGGATTGTGCGATATTTGTGCCGATGAAACACGCGAC
GGGCGGCGGCTGATGGTGGTGCATATGCCTGCCGACGTGTCGAATATGGAAGTGGCAAACTGCCACGACGGGCTGTATTT
CGTCCTGATGGGGCAAATCAATACGGCATTGGGAATGGACGTATCCGCCATCGCATTGGACAGGCTGGCGCAACGGCTGG
GCGGCGGGGAAGTCGAAGAAATCATTATTGCAACCGCTTTTACCGCAGAAGGCAATGCGACGGCGTATGTCCTGTCCGAG
TTTTTTAAAAACCTGCCTTACAAAGTCAGCAGGCTGTCGCAGGGCATCCCCTTGGGCGGCGAATTGGAATATGTCGATGC
GGGAACGCTGGCGCAGGCGGTGTACGAACGCCGCCTGATTAAAGAAGGCGGGGCATAA

Domains

Predicted by InterProScan.

Toprim domain (Toprim_4)

(83-172)

RecR protein (RecR_ZnF)

(41-80)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recR Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

38.191

97.073

0.371

Multiple sequence alignment