Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprA   Type   Machinery gene
Locus tag   DAAJ005_RS18210 Genome accession   NZ_CP044990
Coordinates   3378236..3379324 (+) Length   362 a.a.
NCBI ID   WP_151848337.1    Uniprot ID   A0A5J6YX58
Organism   Deinococcus sp. AJ005     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 3373236..3384324
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DAAJ005_RS18190 (DAAJ005_18185) - 3374848..3375324 (+) 477 WP_192930826.1 hypothetical protein -
  DAAJ005_RS18195 (DAAJ005_18190) - 3375350..3376009 (+) 660 WP_029481209.1 response regulator transcription factor -
  DAAJ005_RS18200 (DAAJ005_18195) - 3376015..3377400 (+) 1386 WP_151848335.1 HAMP domain-containing sensor histidine kinase -
  DAAJ005_RS18205 (DAAJ005_18200) - 3377554..3378186 (+) 633 WP_151848336.1 DoxX family protein -
  DAAJ005_RS18210 (DAAJ005_18205) dprA 3378236..3379324 (+) 1089 WP_151848337.1 DNA-processing protein DprA Machinery gene
  DAAJ005_RS18215 (DAAJ005_18210) - 3379345..3379632 (-) 288 WP_151848338.1 hypothetical protein -
  DAAJ005_RS18220 (DAAJ005_18215) - 3379665..3380627 (+) 963 WP_151848339.1 NAD-dependent epimerase/dehydratase family protein -

Sequence

Protein


Download         Length: 362 a.a.        Molecular weight: 37550.21 Da        Isoelectric Point: 6.9170

>NTDB_id=391152 DAAJ005_RS18210 WP_151848337.1 3378236..3379324(+) (dprA) [Deinococcus sp. AJ005]
MTTAAQNPDAASELLALLILRLTPNLGPRRIESLRRHFGSARAALHAPLLKLRDVPGLDSKSVAGMGNPKAAAGAQAEVE
KAARMGVTLLGRGLDGYPAALEALGDPPPVLWVLGELPELSVVPRAVGIVGTRAASPYAVSLTRRISGDLARAGVVIVSG
LARGIDTAAHGAAVEAGGQSIGVLGCAVNVIYPRENERLAEHLTLISEYPLDTGPAQHHFPTRNRLIAALSAGTLVVEGE
RKSGSLITATHALECGRTVFAVPGRAGDPRAAGPHALLRDGAVLTETAQDVLDELGWGQAPAAPIPDLPPEQARVLKSLT
APATLDDLQATTGLPLPELQTALVMLQLMGLAEEVGGRWARR

Nucleotide


Download         Length: 1089 bp        

>NTDB_id=391152 DAAJ005_RS18210 WP_151848337.1 3378236..3379324(+) (dprA) [Deinococcus sp. AJ005]
GTGACCACTGCCGCCCAGAATCCTGACGCCGCCTCCGAATTGCTGGCCCTGCTGATCCTGCGCCTGACCCCCAACCTGGG
GCCGCGCAGGATCGAATCTTTGCGGCGGCATTTCGGCAGCGCGCGGGCGGCCCTGCATGCGCCCCTGCTGAAGCTGCGTG
ACGTGCCGGGACTGGACTCTAAAAGTGTGGCTGGCATGGGCAACCCCAAAGCAGCGGCGGGCGCACAGGCCGAGGTGGAA
AAGGCCGCACGCATGGGCGTGACCCTGCTGGGCCGGGGGCTGGACGGCTATCCGGCGGCGCTGGAGGCCCTGGGCGATCC
GCCCCCGGTGCTGTGGGTGCTGGGAGAGTTGCCCGAACTGAGCGTGGTGCCGCGCGCCGTGGGCATCGTGGGCACGCGGG
CGGCCAGTCCCTATGCCGTCAGCCTGACCCGCAGGATTTCCGGCGATCTGGCGCGGGCGGGCGTGGTGATCGTCAGCGGA
CTGGCACGCGGCATCGACACGGCGGCCCACGGCGCGGCGGTGGAAGCCGGAGGCCAGAGCATCGGCGTGCTGGGCTGCGC
CGTCAACGTGATCTACCCGCGCGAGAACGAGCGGCTGGCCGAACACCTGACCCTGATCAGCGAGTACCCGCTGGACACTG
GCCCGGCCCAGCATCACTTTCCAACGAGAAACCGTTTGATCGCAGCCCTGAGCGCGGGCACACTGGTGGTGGAGGGCGAG
CGCAAATCTGGCTCCCTAATCACCGCCACGCACGCACTGGAATGCGGGCGCACGGTCTTTGCGGTTCCTGGCCGGGCGGG
CGATCCCCGCGCCGCTGGCCCCCATGCCCTGCTGCGCGACGGCGCGGTGCTGACCGAAACGGCGCAGGACGTGCTGGATG
AACTGGGCTGGGGGCAGGCCCCCGCCGCTCCTATTCCCGATCTGCCGCCCGAGCAGGCCCGTGTGCTGAAGTCCCTGACC
GCCCCCGCCACGCTGGACGATCTCCAGGCCACGACGGGCCTGCCCCTGCCCGAGCTTCAGACCGCGCTGGTCATGCTTCA
ACTGATGGGCCTGGCTGAGGAAGTGGGCGGAAGGTGGGCGCGACGCTAA

Domains

Predicted by InterproScan.

DprA winged helix domain (DprA_WH)

(300-357)

DNA recombination-mediator protein A (DNA_processg_A)

(83-285)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A5J6YX58

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

74.359

96.961

0.721

Multiple sequence alignment