Detailed information    

insolico Bioinformatically predicted

Overview

Name   recR   Type   Machinery gene
Locus tag   DAAJ005_RS02910 Genome accession   NZ_CP044990
Coordinates   181390..182007 (-) Length   205 a.a.
NCBI ID   WP_151845809.1    Uniprot ID   A0A5J6YQ58
Organism   Deinococcus sp. AJ005     
Function   promote later steps in plasmid transformation (predicted from homology)   
Homologous recombination

Genomic Context

Location: 176390..187007
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DAAJ005_RS02895 (DAAJ005_02895) - 178330..179394 (+) 1065 WP_151845806.1 SIS domain-containing protein -
  DAAJ005_RS02900 (DAAJ005_02900) - 179538..180299 (+) 762 WP_151845807.1 metallophosphoesterase -
  DAAJ005_RS02905 (DAAJ005_02905) - 180445..181368 (+) 924 WP_151845808.1 DNA polymerase III -
  DAAJ005_RS02910 (DAAJ005_02910) recR 181390..182007 (-) 618 WP_151845809.1 recombination mediator RecR Machinery gene
  DAAJ005_RS02915 (DAAJ005_02915) - 182063..182353 (-) 291 WP_075835127.1 YbaB/EbfC family nucleoid-associated protein -
  DAAJ005_RS02920 (DAAJ005_02920) moaA 182486..183499 (+) 1014 WP_151845810.1 GTP 3',8-cyclase MoaA -
  DAAJ005_RS02925 (DAAJ005_02925) - 183818..184510 (+) 693 WP_029482793.1 GntR family transcriptional regulator -
  DAAJ005_RS02930 (DAAJ005_02930) rplT 184645..185013 (-) 369 WP_029482792.1 50S ribosomal protein L20 -
  DAAJ005_RS02935 (DAAJ005_02935) rpmI 185013..185219 (-) 207 WP_029482791.1 50S ribosomal protein L35 -
  DAAJ005_RS02940 (DAAJ005_02940) - 185451..186602 (-) 1152 WP_151845811.1 acyl-CoA dehydrogenase family protein -

Sequence

Protein


Download         Length: 205 a.a.        Molecular weight: 22216.54 Da        Isoelectric Point: 5.3137

>NTDB_id=391133 DAAJ005_RS02910 WP_151845809.1 181390..182007(-) (recR) [Deinococcus sp. AJ005]
MKYPPSLVALIRELSRLPGIGPKSAQRLAFYLFEQPREDIERLAGSLLSAKRDLHSCPVCFNITDAEVCDVCSDPARDQA
IICVVEEPGDVIAIERSGEYRGLYHVLHGVLSPMNGVGPEQLHIKPLLPRVTDGQEVILATGTTVEGDATAFYLQRLLEP
LGATVSRIAYGLPVGGALEYADEVTLGRAMTGRQQVSKPRPPTPS

Nucleotide


Download         Length: 618 bp        

>NTDB_id=391133 DAAJ005_RS02910 WP_151845809.1 181390..182007(-) (recR) [Deinococcus sp. AJ005]
ATGAAATACCCCCCTTCCCTCGTCGCGCTGATCCGCGAGCTGTCGCGCCTGCCGGGGATTGGTCCCAAAAGCGCGCAGCG
GCTGGCCTTCTACCTGTTCGAGCAACCGCGTGAGGACATCGAGCGGCTGGCCGGATCGCTGCTGTCGGCCAAGCGCGATC
TGCACAGTTGCCCGGTCTGTTTCAACATCACCGACGCGGAGGTCTGCGACGTGTGCAGCGATCCGGCGCGCGATCAGGCG
ATCATCTGCGTGGTAGAAGAACCCGGCGACGTGATCGCCATTGAGCGTAGCGGCGAGTACCGGGGCCTGTACCACGTCCT
GCACGGCGTCCTGAGTCCCATGAACGGTGTGGGTCCCGAGCAACTTCATATCAAACCCCTGCTGCCGCGTGTGACCGATG
GGCAGGAGGTGATTCTCGCCACCGGGACCACCGTGGAGGGCGACGCCACGGCGTTTTACCTTCAGCGCCTGCTGGAGCCG
CTGGGCGCAACCGTCAGCCGCATCGCCTACGGATTGCCGGTAGGCGGCGCGCTGGAATACGCCGACGAGGTCACGCTGGG
CCGCGCCATGACCGGGCGGCAGCAGGTCAGCAAGCCCCGGCCCCCGACTCCAAGCTGA

Domains

Predicted by InterproScan.

Toprim domain (Toprim_4)

(81-169)

RecR protein (RecR_ZnF)

(40-78)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A5J6YQ58

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recR Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

86.634

98.537

0.854

Multiple sequence alignment