Detailed information    

insolico Bioinformatically predicted

Overview

Name   codY   Type   Regulator
Locus tag   DDE73_RS23195 Genome accession   NZ_CP044978
Coordinates   4518869..4519648 (-) Length   259 a.a.
NCBI ID   WP_000421290.1    Uniprot ID   A0A9W5VKA1
Organism   Bacillus thuringiensis strain BT62     
Function   repression of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 4513869..4524648
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DDE73_RS23170 (DDE73_23180) uppS 4514618..4515394 (-) 777 WP_000971296.1 isoprenyl transferase -
  DDE73_RS23175 (DDE73_23185) frr 4515480..4516037 (-) 558 WP_000531501.1 ribosome recycling factor -
  DDE73_RS23180 (DDE73_23190) pyrH 4516040..4516762 (-) 723 WP_000042668.1 UMP kinase -
  DDE73_RS23185 (DDE73_23195) tsf 4516829..4517716 (-) 888 WP_001018578.1 translation elongation factor Ts -
  DDE73_RS23190 (DDE73_23200) rpsB 4517820..4518521 (-) 702 WP_000111485.1 30S ribosomal protein S2 -
  DDE73_RS23195 (DDE73_23205) codY 4518869..4519648 (-) 780 WP_000421290.1 GTP-sensing pleiotropic transcriptional regulator CodY Regulator
  DDE73_RS23200 (DDE73_23210) hslU 4519726..4521117 (-) 1392 WP_000550078.1 ATP-dependent protease ATPase subunit HslU -
  DDE73_RS23205 (DDE73_23215) hslV 4521140..4521682 (-) 543 WP_000526272.1 ATP-dependent protease proteolytic subunit HslV -
  DDE73_RS23210 (DDE73_23220) xerC 4521725..4522624 (-) 900 WP_001101243.1 tyrosine recombinase XerC -
  DDE73_RS23215 (DDE73_23225) trmFO 4522690..4523994 (-) 1305 WP_000213002.1 FADH(2)-oxidizing methylenetetrahydrofolate--tRNA-(uracil(54)-C(5))- methyltransferase TrmFO -

Sequence

Protein


Download         Length: 259 a.a.        Molecular weight: 28793.05 Da        Isoelectric Point: 4.7165

>NTDB_id=391117 DDE73_RS23195 WP_000421290.1 4518869..4519648(-) (codY) [Bacillus thuringiensis strain BT62]
MELLAKTRKLNALLQSAAGKPVNFREMSDTMCEVIEANVFVVSRRGKLLGYAIHQQIENERMKQMLAERQFPEEYTQSLF
NITETSSNLDVNSAYTAFPVENRELFGQGLTTIVPIVGGGERLGTLVLARLGQEFLDDDLILAEYSSTVVGMEILREKAE
EIEEEARSKAVVQMAISSLSYSELEAIEHIFEELNGTEGLLVASKIADRVGITRSVIVNALRKLESAGVIESRSLGMKGT
YIKVLNDKFLQELAKLKTN

Nucleotide


Download         Length: 780 bp        

>NTDB_id=391117 DDE73_RS23195 WP_000421290.1 4518869..4519648(-) (codY) [Bacillus thuringiensis strain BT62]
ATGGAATTATTAGCAAAAACGAGAAAATTAAATGCGTTATTACAGAGCGCAGCAGGGAAGCCTGTAAACTTTAGAGAAAT
GTCTGACACAATGTGTGAAGTAATCGAAGCAAACGTATTCGTAGTTAGCCGTCGTGGTAAATTACTAGGTTATGCAATTC
ACCAACAAATCGAAAACGAACGCATGAAGCAAATGCTTGCAGAACGTCAATTCCCAGAAGAATATACACAAAGCTTATTC
AACATTACAGAAACATCTTCAAACTTAGATGTGAACAGTGCTTACACAGCATTCCCAGTAGAAAACAGAGAATTATTCGG
TCAAGGTTTAACTACAATCGTACCAATCGTTGGTGGCGGTGAGCGTCTAGGTACATTAGTATTAGCTCGTCTTGGTCAAG
AGTTCTTAGATGATGATTTAATCCTTGCTGAGTACAGCTCAACTGTTGTAGGTATGGAAATCTTACGTGAAAAAGCAGAA
GAAATCGAAGAGGAAGCGCGTAGTAAAGCTGTTGTTCAAATGGCAATCAGCTCATTATCTTACAGTGAGTTAGAAGCAAT
TGAGCATATCTTCGAAGAATTAAATGGAACAGAAGGTTTACTTGTTGCAAGTAAAATTGCTGATCGCGTAGGAATTACTC
GCTCTGTAATCGTAAATGCACTACGTAAATTAGAAAGTGCTGGTGTTATTGAGTCTCGCTCTTTAGGTATGAAAGGAACA
TACATTAAAGTGCTAAACGACAAGTTTCTACAAGAACTTGCTAAATTAAAAACAAACTAA

Domains

Predicted by InterproScan.

CodY GAF-like domain (CodY)

(2-178)

CodY helix-turn-helix domain (HTH_CodY)

(198-255)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  codY Bacillus subtilis subsp. subtilis str. 168

81.467

100

0.815
  codY Lactococcus lactis subsp. lactis strain DGCC12653

46.667

98.456

0.459

Multiple sequence alignment