Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiE   Type   Regulator
Locus tag   HHJ24_RS14555 Genome accession   NZ_CP053234
Coordinates   3011913..3012677 (-) Length   254 a.a.
NCBI ID   WP_001614016.1    Uniprot ID   -
Organism   Escherichia coli strain SCU-106     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 3006913..3017677
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HHJ24_RS14525 (HHJ24_14535) - 3007548..3008906 (-) 1359 WP_170969443.1 PTS galactitol transporter subunit IIC -
  HHJ24_RS14530 (HHJ24_14540) - 3008983..3009264 (-) 282 WP_000084022.1 PTS sugar transporter subunit IIB -
  HHJ24_RS14535 (HHJ24_14545) - 3009261..3009734 (-) 474 WP_021554578.1 PTS sugar transporter subunit IIA -
  HHJ24_RS14540 (HHJ24_14550) - 3009758..3010504 (-) 747 WP_001296489.1 UTRA domain-containing protein -
  HHJ24_RS14545 (HHJ24_14555) nikR 3010703..3011104 (-) 402 WP_001190062.1 nickel-responsive transcriptional regulator NikR -
  HHJ24_RS14550 (HHJ24_14560) nikE 3011110..3011916 (-) 807 WP_000173666.1 nickel import ATP-binding protein NikE -
  HHJ24_RS14555 (HHJ24_14565) amiE 3011913..3012677 (-) 765 WP_001614016.1 nickel import ATP-binding protein NikD Regulator
  HHJ24_RS14560 (HHJ24_14570) nikC 3012677..3013510 (-) 834 WP_001008963.1 nickel ABC transporter permease subunit NikC -
  HHJ24_RS14565 (HHJ24_14575) nikB 3013507..3014451 (-) 945 WP_000947068.1 nickel ABC transporter permease subunit NikB -
  HHJ24_RS14570 (HHJ24_14580) nikA 3014451..3016025 (-) 1575 WP_021554577.1 nickel ABC transporter substrate-binding protein -
  HHJ24_RS14575 (HHJ24_14585) acpT 3016136..3016723 (-) 588 WP_000285783.1 4'-phosphopantetheinyl transferase AcpT -

Sequence

Protein


Download         Length: 254 a.a.        Molecular weight: 26833.46 Da        Isoelectric Point: 6.8311

>NTDB_id=390848 HHJ24_RS14555 WP_001614016.1 3011913..3012677(-) (amiE) [Escherichia coli strain SCU-106]
MPQQIELRNIALQAAQPLVHGVSLTLKRGRVLALVGGSGSGKSLTCAATLGILPAGVRQTAGEILADGKPVSPCALRGIK
IATIMQNPRSAFNPLHTMHTHARETCLALGKPADDATLTAAIEAVGLENAARVLKLYPFEMSGGMLQRMMIAMAVLCESP
FIIADEPTTDLDVVAQARILDLLESIMQKQAPGMLLVTHDMGVVARLADDVAVMSQGKIVEQGDVETLFNAPKHTVTRSL
VSAHLALYGMELAS

Nucleotide


Download         Length: 765 bp        

>NTDB_id=390848 HHJ24_RS14555 WP_001614016.1 3011913..3012677(-) (amiE) [Escherichia coli strain SCU-106]
ATGCCGCAACAGATTGAACTACGTAATATCGCGCTACAGGCCGCGCAGCCGCTGGTGCACGGCGTATCGTTAACCCTTAA
ACGCGGGCGTGTGCTGGCGTTAGTCGGCGGTAGCGGCAGCGGGAAATCACTGACCTGCGCCGCGACGCTGGGCATTTTGC
CCGCTGGCGTTCGCCAGACGGCGGGGGAAATTTTAGCCGATGGCAAACCGGTTTCGCCTTGCGCCCTGCGCGGCATCAAA
ATTGCCACCATCATGCAGAACCCGCGCAGCGCCTTTAATCCACTGCACACCATGCACACCCACGCGCGGGAAACCTGCCT
GGCGTTAGGGAAACCCGCCGATGACGCTACGCTTACCGCTGCCATAGAAGCGGTGGGGCTGGAAAACGCCGCGCGCGTGC
TGAAGCTGTACCCGTTCGAGATGAGCGGCGGCATGTTGCAGCGCATGATGATTGCGATGGCGGTGCTGTGTGAATCACCG
TTTATCATCGCCGATGAACCGACCACCGACCTCGACGTGGTAGCACAGGCGCGCATCCTCGATCTGCTGGAAAGCATTAT
GCAAAAACAAGCGCCGGGAATGCTGCTGGTCACCCATGATATGGGCGTTGTGGCGCGTCTGGCGGATGACGTGGCGGTGA
TGTCACAAGGTAAAATTGTCGAACAGGGCGATGTAGAAACGCTGTTTAACGCCCCCAAACATACGGTGACGCGCAGCCTG
GTTTCCGCTCATCTCGCCCTCTACGGTATGGAGCTGGCATCATGA

Domains

Predicted by InterProScan.

ABC transporter (ABC_tran)

(20-168)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiE Streptococcus thermophilus LMG 18311

41.6

98.425

0.409
  amiE Streptococcus thermophilus LMD-9

41.6

98.425

0.409
  amiE Streptococcus salivarius strain HSISS4

40.4

98.425

0.398