Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilN   Type   Machinery gene
Locus tag   F7R60_RS17830 Genome accession   NZ_CP044519
Coordinates   3720967..3721608 (-) Length   213 a.a.
NCBI ID   WP_000201227.1    Uniprot ID   A0A009HSE6
Organism   Acinetobacter baumannii strain 29FS20     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3715967..3726608
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  F7R60_RS17810 (F7R60_18005) aroK 3716883..3717452 (-) 570 WP_000643712.1 shikimate kinase AroK -
  F7R60_RS17815 (F7R60_18010) pilQ 3717464..3719629 (-) 2166 WP_001017033.1 type IV pilus secretin PilQ family protein Machinery gene
  F7R60_RS17820 (F7R60_18015) pilP 3719692..3720219 (-) 528 WP_000695069.1 pilus assembly protein PilP Machinery gene
  F7R60_RS17825 (F7R60_18020) pilO 3720230..3720970 (-) 741 WP_000076101.1 type 4a pilus biogenesis protein PilO Machinery gene
  F7R60_RS17830 (F7R60_18025) pilN 3720967..3721608 (-) 642 WP_000201227.1 PilN domain-containing protein Machinery gene
  F7R60_RS17835 (F7R60_18030) pilM 3721608..3722666 (-) 1059 WP_002014066.1 pilus assembly protein PilM Machinery gene
  F7R60_RS17840 (F7R60_18035) ponA 3722828..3725383 (+) 2556 WP_046023732.1 penicillin-binding protein PBP1a -
  F7R60_RS17845 (F7R60_18040) - 3725401..3726225 (-) 825 WP_094081296.1 putative RNA methyltransferase -
  F7R60_RS17850 (F7R60_18045) - 3726228..3726560 (-) 333 WP_000169602.1 hypothetical protein -

Sequence

Protein


Download         Length: 213 a.a.        Molecular weight: 24019.35 Da        Isoelectric Point: 5.3968

>NTDB_id=390809 F7R60_RS17830 WP_000201227.1 3720967..3721608(-) (pilN) [Acinetobacter baumannii strain 29FS20]
MATINLLPWREELREQRKKQFITLCFGVVVLGITTVFGGWFYFDHKLDDQEQANQLIMSTNQNLDQQLKTLNGLQEQRDA
IIERMKLIQGLQSQRPVVVRLVDELVRVTPSAMYLTKFSRTGDKFTIEGKAESPNTVAELLRNLEASPWYRNAFMNSFLA
NEEKKDKAASSLLPRVEDHYGSFVVTVDLGEMGVTTTDDSAKPSTGESVGAAK

Nucleotide


Download         Length: 642 bp        

>NTDB_id=390809 F7R60_RS17830 WP_000201227.1 3720967..3721608(-) (pilN) [Acinetobacter baumannii strain 29FS20]
ATGGCAACAATTAATTTACTGCCTTGGCGCGAAGAGCTGAGGGAGCAACGAAAAAAACAATTTATAACGTTATGTTTTGG
GGTGGTTGTTTTGGGGATTACAACCGTATTTGGGGGATGGTTTTATTTTGACCATAAATTAGATGATCAAGAGCAAGCGA
ATCAGCTCATTATGAGCACAAATCAGAACCTTGATCAGCAATTAAAAACATTAAACGGCTTACAGGAACAGCGTGATGCC
ATTATTGAACGCATGAAGTTGATTCAAGGTTTGCAGAGTCAACGTCCAGTAGTGGTAAGACTTGTTGATGAGTTAGTTCG
AGTCACACCATCAGCTATGTATTTAACGAAATTTAGCCGAACCGGAGATAAGTTTACGATTGAAGGTAAAGCTGAAAGTC
CAAATACAGTAGCCGAACTACTCCGTAATCTTGAAGCATCTCCTTGGTATCGTAATGCTTTTATGAACTCTTTCTTGGCT
AATGAAGAGAAAAAAGATAAGGCTGCAAGTTCTCTTCTTCCTAGGGTGGAAGACCACTATGGTAGTTTTGTTGTGACTGT
CGATTTGGGGGAAATGGGCGTGACCACAACGGATGATTCTGCTAAGCCATCTACAGGTGAAAGTGTGGGGGCTGCTAAAT
GA

Domains

Predicted by InterproScan.

Fimbrial assembly protein (PilN) (PilN)

(100-167)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A009HSE6

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilN Acinetobacter baumannii D1279779

100

100

1
  comN Acinetobacter baylyi ADP1

71.905

98.592

0.709

Multiple sequence alignment