Detailed information    

insolico Bioinformatically predicted

Overview

Name   comF   Type   Machinery gene
Locus tag   F7R58_RS09775 Genome accession   NZ_CP044507
Coordinates   2091605..2092258 (+) Length   217 a.a.
NCBI ID   WP_158064739.1    Uniprot ID   A0A5P5ZQV0
Organism   Chryseobacterium sp. strain SNU WT7     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2086605..2097258
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  F7R58_RS09745 (F7R58_09745) - 2086987..2087721 (-) 735 WP_158064733.1 DUF4230 domain-containing protein -
  F7R58_RS09750 (F7R58_09750) - 2087802..2088341 (-) 540 WP_187695229.1 hypothetical protein -
  F7R58_RS09755 (F7R58_09755) - 2088356..2089399 (-) 1044 WP_158064735.1 acyl transferase -
  F7R58_RS09760 (F7R58_09760) - 2089764..2090144 (-) 381 WP_158064736.1 GxxExxY protein -
  F7R58_RS09765 (F7R58_09765) - 2090164..2090955 (-) 792 WP_158064737.1 UDP-2,3-diacylglucosamine diphosphatase -
  F7R58_RS09770 (F7R58_09770) - 2091058..2091504 (-) 447 WP_158064738.1 6-pyruvoyl trahydropterin synthase family protein -
  F7R58_RS09775 (F7R58_09775) comF 2091605..2092258 (+) 654 WP_158064739.1 ComF family protein Machinery gene
  F7R58_RS09780 (F7R58_09780) upp 2092275..2092925 (-) 651 WP_158064740.1 uracil phosphoribosyltransferase -
  F7R58_RS09785 (F7R58_09785) - 2092993..2093340 (-) 348 WP_158064741.1 four helix bundle protein -
  F7R58_RS09790 (F7R58_09790) der 2093394..2094704 (-) 1311 WP_158064742.1 ribosome biogenesis GTPase Der -
  F7R58_RS09795 (F7R58_09795) - 2094843..2095322 (+) 480 WP_158064743.1 heme-binding domain-containing protein -
  F7R58_RS09800 (F7R58_09800) - 2095326..2095736 (+) 411 WP_158064744.1 thiol-disulfide oxidoreductase DCC family protein -
  F7R58_RS09805 (F7R58_09805) - 2095784..2096434 (+) 651 WP_158064745.1 DUF4290 domain-containing protein -

Sequence

Protein


Download         Length: 217 a.a.        Molecular weight: 25064.03 Da        Isoelectric Point: 7.7309

>NTDB_id=390699 F7R58_RS09775 WP_158064739.1 2091605..2092258(+) (comF) [Chryseobacterium sp. strain SNU WT7]
MLLDLLFPNRCLHCNRIIDAREMVCGICMDQIKFTHHDFITPNFLTERCSLLFPVRHACALMQFEEDSLSRKIVHQLKYG
QREMAGKVLAGWACERLDFAEEVPDLMISVPLHPRKLRERGYNQLHLFTETVAAHFSIAFDHQLVKRNHYRKAQAKKDKS
HRTETEGLFSVAKRFENRHVLIIDDVFTTGNTISSVAWEILKAGNNTVSVLVMAVDE

Nucleotide


Download         Length: 654 bp        

>NTDB_id=390699 F7R58_RS09775 WP_158064739.1 2091605..2092258(+) (comF) [Chryseobacterium sp. strain SNU WT7]
ATGCTTCTGGACCTGCTTTTTCCGAACCGCTGCCTGCACTGCAACCGAATCATCGATGCCAGAGAAATGGTGTGCGGGAT
CTGCATGGATCAGATAAAGTTCACGCACCATGACTTTATAACTCCCAATTTCCTTACCGAAAGATGCAGTCTCCTATTTC
CCGTGAGGCATGCCTGCGCACTGATGCAGTTTGAAGAAGACAGCCTGAGCCGGAAAATCGTGCATCAGCTGAAATACGGC
CAGCGCGAAATGGCAGGTAAAGTACTTGCCGGCTGGGCTTGTGAAAGGCTTGATTTTGCTGAAGAGGTACCGGATCTGAT
GATTAGCGTGCCGCTGCATCCCAGAAAACTTCGTGAGCGCGGCTATAACCAGCTTCATCTCTTCACCGAAACCGTGGCAG
CACACTTCAGCATTGCCTTTGATCATCAACTTGTAAAACGCAACCATTACCGTAAAGCTCAGGCCAAAAAAGACAAGTCG
CACCGCACGGAAACAGAGGGTTTATTTTCGGTCGCGAAAAGGTTTGAGAACAGACATGTACTGATTATTGACGATGTTTT
TACAACCGGCAACACCATAAGCTCGGTAGCCTGGGAAATCCTGAAAGCCGGCAATAACACGGTCTCTGTTCTGGTAATGG
CTGTTGATGAGTAA

Domains

Predicted by InterproScan.

Double zinc ribbon domain (DZR_2)

(2-36)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A5P5ZQV0

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comF Riemerella anatipestifer ATCC 11845 = DSM 15868

48.848

100

0.488

Multiple sequence alignment